Remove redundant shell safety boilerplate

lyh970817 · lyh970817 · commit c5343eb9e82f · 2026-05-13T19:17:45.000+08:00
diff --git a/modules/nf-core/gcta/bivariateremlldms/main.nf b/modules/nf-core/gcta/bivariateremlldms/main.nf
@@ -28,7 +28,6 @@ process GCTA_BIVARIATEREMLLDMS {
     def extra_args = task.ext.args ?: ''
 
     """
-    set -euo pipefail
 
     gcta \\
         --reml-bivar 1 2 \\
diff --git a/modules/nf-core/gcta/makegrmpart/main.nf b/modules/nf-core/gcta/makegrmpart/main.nf
@@ -28,7 +28,6 @@ process GCTA_MAKEGRMPART {
     def multi_file_flag = genotype_extension == 'pgen' ? '--mpfile' : '--mbfile'
 
     """
-    set -euo pipefail
 
     gcta \\
         ${multi_file_flag} ${mfile} \\
