Is there an existing module for this?

• I have searched for the existing module

Is there an open PR for this?

• I have searched for existing PRs

Is there an open issue for this?

• I have searched for existing issues

Further Information

TRTools includes a variety of utilities for filtering, quality control and analysis of tandem repeats downstream of genotyping them from next-generation sequencing. It supports multiple recent genotyping tools.

mergeSTR: a tool that merges multiple VCF files produced by the same TR genotyper into a single VCF file.

The proposed module would wrap mergeSTR.

Links:

TRTools:
GitHub: https://github.com/gymrek-lab/TRTools
Documentation: https://trtools.readthedocs.io/
Bioconda: https://anaconda.org/bioconda/trtools

mergeSTR
Documentation: https://trtools.readthedocs.io/en/stable/source/mergeSTR.html

Are you going to work on this?

• If I'm planning to work on this module, I added myself to the Assignees to facilitate tracking who is working on the module

Software requirements (conda)

---
# yaml-language-server: $schema=https://raw.githubusercontent.com/nf-core/modules/master/modules/environment-schema.json
channels:
  - conda-forge
  - bioconda
dependencies:
  - bioconda::trtools=6.1.0