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Add gcta/grmcutoff module#11006

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lyh970817 merged 1 commit into
nf-core:masterfrom
lyh970817:modules/gcta-removerelatedsubjects-create
Jun 8, 2026
Merged

Add gcta/grmcutoff module#11006
lyh970817 merged 1 commit into
nf-core:masterfrom
lyh970817:modules/gcta-removerelatedsubjects-create

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@lyh970817 lyh970817 commented Mar 21, 2026

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This PR adds the gcta/grmcutoff module, which applies a genetic relationship cutoff to a dense GRM with gcta --grm-cutoff.

This PR should merge after the gcta/makegrm module in #11650.

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the module conventions in the contribution docs
  • If necessary, include test data in your PR.
  • Remove all TODO statements.
  • Broadcast software version numbers to topic: versions - See version_topics
  • Follow the naming conventions.
  • Follow the parameters requirements.
  • Follow the input/output options guidelines.
  • Add a resource label
  • Use BioConda and BioContainers if possible to fulfil software requirements.
  • nf-core modules test gcta/grmcutoff --profile docker
  • nf-core modules test gcta/grmcutoff --profile singularity
  • nf-core modules test gcta/grmcutoff --profile conda

@lyh970817 lyh970817 mentioned this pull request Mar 21, 2026
17 tasks
@lyh970817 lyh970817 force-pushed the modules/gcta-removerelatedsubjects-create branch from 6398bd1 to 2a136c7 Compare March 21, 2026 12:53
@lyh970817 lyh970817 mentioned this pull request Mar 21, 2026
14 tasks
@lyh970817 lyh970817 force-pushed the modules/gcta-removerelatedsubjects-create branch 3 times, most recently from f34f12c to dc50b5d Compare May 22, 2026 16:06
@lyh970817 lyh970817 force-pushed the modules/gcta-removerelatedsubjects-create branch 3 times, most recently from cf05109 to 6ba256b Compare May 25, 2026 13:54
@lyh970817 lyh970817 requested a review from SPPearce June 7, 2026 12:37
@lyh970817 lyh970817 changed the title Add gcta/removerelatedsubjects module Add gcta/grmcutoff module Jun 7, 2026
@lyh970817 lyh970817 force-pushed the modules/gcta-removerelatedsubjects-create branch from 144b13c to d892c1b Compare June 7, 2026 16:05
@lyh970817 lyh970817 added this pull request to the merge queue Jun 8, 2026
Merged via the queue into nf-core:master with commit 81ee454 Jun 8, 2026
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@lyh970817 lyh970817 deleted the modules/gcta-removerelatedsubjects-create branch June 8, 2026 09:17
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2 participants