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nf-core-module-dev bots updating hmmer tools: hmmbuild, hmmsearch, hmmalign to topic versions and latest standards#11458

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vagkaratzas wants to merge 3 commits intomasterfrom
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nf-core-module-dev bots updating hmmer tools: hmmbuild, hmmsearch, hmmalign to topic versions and latest standards#11458
vagkaratzas wants to merge 3 commits intomasterfrom
update-hmmer/hmmbuild-hmmsearch-hmmalign

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@vagkaratzas
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@vagkaratzas vagkaratzas commented May 1, 2026

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the module conventions in the contribution docs
  • If necessary, include test data in your PR.
  • Remove all TODO statements.
  • Broadcast software version numbers to topic: versions - See version_topics
  • Follow the naming conventions.
  • Follow the parameters requirements.
  • Follow the input/output options guidelines.
  • Add a resource label
  • Use BioConda and BioContainers if possible to fulfil software requirements.
  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
    • For modules:
      • nf-core modules test <MODULE> --profile docker
      • nf-core modules test <MODULE> --profile singularity
      • nf-core modules test <MODULE> --profile conda
    • For subworkflows:
      • nf-core subworkflows test <SUBWORKFLOW> --profile docker
      • nf-core subworkflows test <SUBWORKFLOW> --profile singularity
      • nf-core subworkflows test <SUBWORKFLOW> --profile conda

…malign to topic versions and latest standards
@github-actions github-actions Bot added the size/m label May 1, 2026
@vagkaratzas
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TODO: update downstream subworkflows

@github-actions github-actions Bot added size/l and removed size/m labels May 2, 2026
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