Skip to content

bump htslib pins for ensemblvep#11771

Merged
maxulysse merged 5 commits into
masterfrom
fix/vep_htslib
May 27, 2026
Merged

bump htslib pins for ensemblvep#11771
maxulysse merged 5 commits into
masterfrom
fix/vep_htslib

Conversation

@matthdsm
Copy link
Copy Markdown
Contributor

PR checklist

Closes #XXX

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the module conventions in the contribution docs
  • If necessary, include test data in your PR.
  • Remove all TODO statements.
  • Broadcast software version numbers to topic: versions - See version_topics
  • Follow the naming conventions.
  • Follow the parameters requirements.
  • Follow the input/output options guidelines.
  • Add a resource label
  • Use BioConda and BioContainers if possible to fulfil software requirements.
  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
    • For modules:
      • nf-core modules test <MODULE> --profile docker
      • nf-core modules test <MODULE> --profile singularity
      • nf-core modules test <MODULE> --profile conda
    • For subworkflows:
      • nf-core subworkflows test <SUBWORKFLOW> --profile docker
      • nf-core subworkflows test <SUBWORKFLOW> --profile singularity
      • nf-core subworkflows test <SUBWORKFLOW> --profile conda

@matthdsm matthdsm requested a review from maxulysse as a code owner May 27, 2026 07:46
@matthdsm matthdsm enabled auto-merge May 27, 2026 07:48
@maxulysse maxulysse disabled auto-merge May 27, 2026 08:06
@maxulysse maxulysse merged commit 251885f into master May 27, 2026
61 of 63 checks passed
@maxulysse maxulysse deleted the fix/vep_htslib branch May 27, 2026 08:07
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

Projects

None yet

Development

Successfully merging this pull request may close these issues.

2 participants