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Readd dataset version extraction#12026

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ammaraziz wants to merge 9 commits into
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Readd dataset version extraction#12026
ammaraziz wants to merge 9 commits into
nf-core:masterfrom
ammaraziz:master

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@ammaraziz

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PR checklist

  • This comment contains a description of changes (with reason).
    The change from versions.yaml to channels unfortunately dropped the dataset version. This PR adds it back.
  • Broadcast software version numbers to topic: versions - See version_topics

Fingers crossed this works!

@ammaraziz ammaraziz requested a review from MarieLataretu June 17, 2026 06:28
@ammaraziz

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Hi @MarieLataretu pinging you for review as you were the last updater of this module from verions.yaml to topics.

Thanks!

@MarieLataretu

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Hi @ammaraziz, I have smaller comments, but looks great otherwise 🙂

Comment thread modules/nf-core/nextclade/datasetget/meta.yml Outdated
versions_nextclade_dataset:
- - ${task.process}:
type: string
description: The process the process

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Suggested change
description: The process the process
description: The process the versions were collected from

Comment thread modules/nf-core/nextclade/datasetget/main.nf
ammaraziz and others added 2 commits June 22, 2026 10:20
Co-authored-by: MarieLataretu <52002068+MarieLataretu@users.noreply.github.com>
@ammaraziz ammaraziz enabled auto-merge June 23, 2026 00:15
"2": [
[
"NEXTCLADE_DATASETGET",
"nextclade-dataset",

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This hasn't picked up the version? Something to check.

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If it's from the stub, maybe dummy-fy a version string so it still works with the version capture

"versions_nextclade_dataset": [
[
"NEXTCLADE_DATASETGET",
"nextclade-dataset",

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Same here

versions_nextclade_dataset:
- - ${task.process}:
type: string
description: The process the process

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Not yet addressed

@jfy133 jfy133 dismissed MarieLataretu’s stale review June 24, 2026 06:22

Blocking even if second reviewer approves

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3 participants