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add hmmer/hmmemit with deterministic fasta output (-c flag in test)#12116

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vagkaratzas merged 1 commit into
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add-hmmer_hmmemit
Jun 19, 2026
Merged

add hmmer/hmmemit with deterministic fasta output (-c flag in test)#12116
vagkaratzas merged 1 commit into
masterfrom
add-hmmer_hmmemit

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Linked to this proteinfamilies issue

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the module conventions in the contribution docs
  • If necessary, include test data in your PR.
  • Remove all TODO statements.
  • Broadcast software version numbers to topic: versions - See version_topics
  • Follow the naming conventions.
  • Follow the parameters requirements.
  • Follow the input/output options guidelines.
  • Add a resource label
  • Use BioConda and BioContainers if possible to fulfil software requirements.
  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
    • For modules:
      • nf-core modules test <MODULE> --profile docker
      • nf-core modules test <MODULE> --profile singularity
      • nf-core modules test <MODULE> --profile conda
    • For subworkflows:
      • nf-core subworkflows test <SUBWORKFLOW> --profile docker
      • nf-core subworkflows test <SUBWORKFLOW> --profile singularity
      • nf-core subworkflows test <SUBWORKFLOW> --profile conda

@vagkaratzas vagkaratzas added this pull request to the merge queue Jun 19, 2026
Merged via the queue into master with commit 354ee93 Jun 19, 2026
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@vagkaratzas vagkaratzas deleted the add-hmmer_hmmemit branch June 19, 2026 21:56
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