Update presto filterseq module#12205
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mashehu
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Jun 30, 2026
| def args = task.ext.args ?: '' | ||
| def args2 = task.ext.args2 ?: '' | ||
| def prefix = task.ext.prefix ?: "${meta.id}" | ||
| def log_prefix = reads.baseName.replaceFirst(/\.f(ast)?q$/, '') |
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| def log_prefix = reads.baseName.replaceFirst(/\.f(ast)?q$/, '') | |
| def log_prefix = reads.simpleName |
https://docs.seqera.io/nextflow/reference/stdlib-types#simplename-string
mashehu
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Jun 30, 2026
| "${task.process}": | ||
| presto: \$( FilterSeq.py --version | awk -F' ' '{print \$2}' ) | ||
| END_VERSIONS | ||
| """ |
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not needed anymore
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okay, trying to remove the whole section, but github gui doesn't allow that 🤷🏻
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Opened issue: #12192
PR checklist
Closes #XXX
topic: versions- See version_topicslabelnf-core modules test <MODULE> --profile dockernf-core modules test <MODULE> --profile singularitynf-core modules test <MODULE> --profile condanf-core subworkflows test <SUBWORKFLOW> --profile dockernf-core subworkflows test <SUBWORKFLOW> --profile singularitynf-core subworkflows test <SUBWORKFLOW> --profile conda