Update nextflow.config for custom profiles for different institutions to match template

olgabot · olgabot · commit f478094bc6d5 · 2025-06-03T12:51:33.000-07:00
diff --git a/nextflow.config b/nextflow.config
@@ -173,7 +173,7 @@ profiles {
 }
 
 // Load nf-core custom profiles from different Institutions
-includeConfig !System.getenv('NXF_OFFLINE') && params.custom_config_base ? "${params.custom_config_base}/nfcore_custom.config" : "/dev/null"
+includeConfig params.custom_config_base && (!System.getenv('NXF_OFFLINE') || !params.custom_config_base.startsWith('http')) ? "${params.custom_config_base}/nfcore_custom.config" : "/dev/null"
 
 // Load nf-core/proteinannotator custom profiles from different institutions.
 // TODO nf-core: Optionally, you can add a pipeline-specific nf-core config at https://github.com/nf-core/configs

Original file line number	Diff line number	Diff line change
`@@ -173,7 +173,7 @@ profiles {`
`173`	`173`	`}`
`174`	`174`
`175`	`175`	`// Load nf-core custom profiles from different Institutions`
`176`		`-includeConfig !System.getenv('NXF_OFFLINE') && params.custom_config_base ? "${params.custom_config_base}/nfcore_custom.config" : "/dev/null"`
	`176`	`+includeConfig params.custom_config_base && (!System.getenv('NXF_OFFLINE') \|\| !params.custom_config_base.startsWith('http')) ? "${params.custom_config_base}/nfcore_custom.config" : "/dev/null"`
`177`	`177`
`178`	`178`	`// Load nf-core/proteinannotator custom profiles from different institutions.`
`179`	`179`	`// TODO nf-core: Optionally, you can add a pipeline-specific nf-core config at https://github.com/nf-core/configs`