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pipeline description and nf-core modules updates #69

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Merged
vagkaratzas merged 2 commits into from
Feb 4, 2026
Merged

pipeline description and nf-core modules updates #69

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2ff19cd
pipeline descr change
vagkaratzas Feb 4, 2026
a4d3fe5
module updates
vagkaratzas Feb 4, 2026
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3 changes: 1 addition & 2 deletions .nf-core.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -12,8 +12,7 @@ nf_core_version: 3.5.1
repository_type: pipeline
template:
author: Olga Botvinnik
description: The best protein annotation pipeline in the world. Protein fasta ->
??? -> Annotations!
description: Generation of sequence-level annotations for amino acid sequences
version: 1.0.0dev
force: true
outdir: .
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2 changes: 1 addition & 1 deletion assets/email_template.html
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Expand Up @@ -4,7 +4,7 @@
<meta http-equiv="X-UA-Compatible" content="IE=edge">
<meta name="viewport" content="width=device-width, initial-scale=1">

<meta name="description" content="nf-core/proteinannotator: The best protein annotation pipeline in the world. Protein fasta -> ??? -> Annotations!">
<meta name="description" content="nf-core/proteinannotator: Generation of sequence-level annotations for amino acid sequences">
<title>nf-core/proteinannotator Pipeline Report</title>
</head>
<body>
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6 changes: 3 additions & 3 deletions modules.json
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Expand Up @@ -37,7 +37,7 @@
},
"seqkit/replace": {
"branch": "master",
"git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
"git_sha": "2eccc519c7d25e24c8ef2a5a94062630b8383daf",
"installed_by": ["faa_seqfu_seqkit"]
},
"seqkit/rmdup": {
Expand All @@ -52,7 +52,7 @@
},
"seqkit/stats": {
"branch": "master",
"git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
"git_sha": "28935b89b7e1f19e835f8c6e4c8322d4b505dded",
"installed_by": ["modules"]
},
"untar": {
Expand All @@ -66,7 +66,7 @@
"nf-core": {
"faa_seqfu_seqkit": {
"branch": "master",
"git_sha": "911a3c360b0ebdae4e36beaf734e6905174d3507",
"git_sha": "2eccc519c7d25e24c8ef2a5a94062630b8383daf",
"installed_by": ["subworkflows"]
},
"utils_nextflow_pipeline": {
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12 changes: 1 addition & 11 deletions modules/nf-core/seqkit/replace/main.nf
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28 changes: 22 additions & 6 deletions modules/nf-core/seqkit/replace/meta.yml
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80 changes: 56 additions & 24 deletions modules/nf-core/seqkit/replace/tests/main.nf.test.snap
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12 changes: 1 addition & 11 deletions modules/nf-core/seqkit/stats/main.nf
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28 changes: 22 additions & 6 deletions modules/nf-core/seqkit/stats/meta.yml
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