Add Interproscan by olgabot · Pull Request #9 · nf-core/proteinannotator

olgabot · 2025-03-24T18:54:42Z

Add interproscan module
Got test input to work

Addresses: #3

PR checklist

heuermh · 2025-03-24T19:12:22Z

@olgabot could you push an empty commit to this branch? Github Actions wasn't enabled when the pull request was created

$ git commit --allow-empty -m "Enable GitHub Actions CI on this pull request"
$ git push

olgabot · 2025-03-25T17:01:43Z

@heuermh, will do! Wanted to also report this docker build error on my M2 mac, which is probably an architecture issue

(nf-core-v2) 
 ✘  Mon 24 Mar - 16:15  ~/code/nf-core/modules/modules/nf-core/interproscan   origin ☊ master 3☀ 2● 
  docker build . -t quay.io/nf-core/interproscan:5.73-104.0
[+] Building 23.9s (10/12)                                                                                                                                                         docker:desktop-linux
 => [internal] load build definition from Dockerfile                                                                                                                                               0.0s
 => => transferring dockerfile: 1.94kB                                                                                                                                                             0.0s
 => [internal] load metadata for docker.io/mambaorg/micromamba:2.0.5                                                                                                                               0.4s
 => [internal] load .dockerignore                                                                                                                                                                  0.0s
 => => transferring context: 2B                                                                                                                                                                    0.0s
 => [internal] load build context                                                                                                                                                                  0.0s
 => => transferring context: 9.72kB                                                                                                                                                                0.0s
 => [1/8] FROM docker.io/mambaorg/micromamba:2.0.5@sha256:8d0d4cad074afe3ac93b58dce88bd2659153d3fa6de3a6968f501710e8d3c832                                                                         1.6s
 => => resolve docker.io/mambaorg/micromamba:2.0.5@sha256:8d0d4cad074afe3ac93b58dce88bd2659153d3fa6de3a6968f501710e8d3c832                                                                         0.0s
 => => sha256:ca8feed3070834bddfa15ffdc519c000852c511f2682af29fd9dfa6fe72d926d 5.86kB / 5.86kB                                                                                                     0.0s
 => => sha256:0996a45dbf081690ef07d06d966daaf33ddccd439dcfe9092dec0cd7bf53e768 122.68kB / 122.68kB                                                                                                 0.5s
 => => sha256:c24f4d9717cc8ead02156bf9ead4a0943dfe7cbf84cb9f4a6b08600f1e263c5b 548B / 548B                                                                                                         0.3s
 => => sha256:8d0d4cad074afe3ac93b58dce88bd2659153d3fa6de3a6968f501710e8d3c832 2.36kB / 2.36kB                                                                                                     0.0s
 => => sha256:7c1325c9891758c8fbb14afa52f5c75ac38c12c9bf0ba8b8d9a37118480284fb 2.18kB / 2.18kB                                                                                                     0.0s
 => => sha256:8d442fcb0ca8120ef7c558109e962bc23e5b9991714a43d11f1255981a5c91ec 8.38MB / 8.38MB                                                                                                     1.0s
 => => sha256:c14b2f689c1b34cb8d9f268f7db19a54408a5a57c01ff7b6a4e57c65765c792c 283B / 283B                                                                                                         0.5s
 => => sha256:4f4fb700ef54461cfa02571ae0db9a0dc1e0cdb5577484a6d75e68dc38e8acc1 32B / 32B                                                                                                           0.7s
 => => sha256:bd1693c48ea5c20426b078e87b857fdc684a0973f0a6baae2ce010f6f6003b13 3.79kB / 3.79kB                                                                                                     0.9s
 => => sha256:ad9621110251bbf75f24aaa0c4b52e0802d11bc590921015401adda364b78b19 681B / 681B                                                                                                         1.1s
 => => sha256:a69ca0ecce5760df4d789643fca9750fb31a934c16d235cb32df678cb49124a4 644B / 644B                                                                                                         1.3s
 => => extracting sha256:8d442fcb0ca8120ef7c558109e962bc23e5b9991714a43d11f1255981a5c91ec                                                                                                          0.1s
 => => extracting sha256:0996a45dbf081690ef07d06d966daaf33ddccd439dcfe9092dec0cd7bf53e768                                                                                                          0.0s
 => => extracting sha256:c24f4d9717cc8ead02156bf9ead4a0943dfe7cbf84cb9f4a6b08600f1e263c5b                                                                                                          0.0s
 => => extracting sha256:c14b2f689c1b34cb8d9f268f7db19a54408a5a57c01ff7b6a4e57c65765c792c                                                                                                          0.0s
 => => extracting sha256:bd1693c48ea5c20426b078e87b857fdc684a0973f0a6baae2ce010f6f6003b13                                                                                                          0.0s
 => => sha256:5b30bfc33ca93fed51a26f6dedad278c650faf9eb6ddc752796d4e31cb4c10b1 343B / 343B                                                                                                         1.5s
 => => extracting sha256:4f4fb700ef54461cfa02571ae0db9a0dc1e0cdb5577484a6d75e68dc38e8acc1                                                                                                          0.0s
 => => extracting sha256:ad9621110251bbf75f24aaa0c4b52e0802d11bc590921015401adda364b78b19                                                                                                          0.0s
 => => extracting sha256:a69ca0ecce5760df4d789643fca9750fb31a934c16d235cb32df678cb49124a4                                                                                                          0.0s
 => => extracting sha256:5b30bfc33ca93fed51a26f6dedad278c650faf9eb6ddc752796d4e31cb4c10b1                                                                                                          0.0s
 => [2/8] COPY --chown=mambauser:mambauser env.lock /tmp/env.lock                                                                                                                                  0.0s
 => [3/8] RUN micromamba install --name base --yes --file /tmp/env.lock     && micromamba clean --all --yes                                                                                       19.8s
 => [4/8] RUN apt-get update && apt-get install -y --no-install-recommends     libgomp1     && rm -rf /var/lib/apt/lists/*                                                                         2.2s 
 => [5/8] WORKDIR /opt                                                                                                                                                                             0.0s 
 => ERROR [6/8] RUN wget ftp://ftp.ebi.ac.uk/pub/software/unix/iprscan/5/5.73-104.0/alt/interproscan-core-5.73-104.0.tar.gz &&     wget ftp://ftp.ebi.ac.uk/pub/software/unix/iprscan/5/5.73-104.  0.1s 
------                                                                                                                                                                                                  
 > [6/8] RUN wget ftp://ftp.ebi.ac.uk/pub/software/unix/iprscan/5/5.73-104.0/alt/interproscan-core-5.73-104.0.tar.gz &&     wget ftp://ftp.ebi.ac.uk/pub/software/unix/iprscan/5/5.73-104.0/alt/interproscan-core-5.73-104.0.tar.gz.md5 &&     md5sum -c interproscan-core-5.73-104.0.tar.gz.md5 &&     tar -zxf interproscan-core-5.73-104.0.tar.gz &&     rm interproscan-core-5.73-104.0.tar.gz* &&     mv /opt/interproscan-5.73-104.0 /opt/interproscan:                                                                                                                                                           
0.106 qemu-x86_64: Could not open '/lib64/ld-linux-x86-64.so.2': No such file or directory
------
Dockerfile:29
--------------------
  28 |     
  29 | >>> RUN wget ftp://ftp.ebi.ac.uk/pub/software/unix/iprscan/5/${VERSION}/alt/interproscan-core-${VERSION}.tar.gz && \
  30 | >>>     wget ftp://ftp.ebi.ac.uk/pub/software/unix/iprscan/5/${VERSION}/alt/interproscan-core-${VERSION}.tar.gz.md5 && \
  31 | >>>     md5sum -c interproscan-core-${VERSION}.tar.gz.md5 && \
  32 | >>>     tar -zxf interproscan-core-${VERSION}.tar.gz && \
  33 | >>>     rm interproscan-core-${VERSION}.tar.gz* && \
  34 | >>>     mv /opt/interproscan-${VERSION} /opt/interproscan
  35 |     
--------------------
ERROR: failed to solve: process "/usr/local/bin/_dockerfile_shell.sh wget ftp://ftp.ebi.ac.uk/pub/software/unix/iprscan/5/${VERSION}/alt/interproscan-core-${VERSION}.tar.gz &&     wget ftp://ftp.ebi.ac.uk/pub/software/unix/iprscan/5/${VERSION}/alt/interproscan-core-${VERSION}.tar.gz.md5 &&     md5sum -c interproscan-core-${VERSION}.tar.gz.md5 &&     tar -zxf interproscan-core-${VERSION}.tar.gz &&     rm interproscan-core-${VERSION}.tar.gz* &&     mv /opt/interproscan-${VERSION} /opt/interproscan" did not complete successfully: exit code: 255

github-actions · 2025-03-25T18:06:40Z

`nf-core pipelines lint` overall result: Passed ✅ ⚠️

Posted for pipeline commit 1287fc7

+| ✅ 199 tests passed       |+
#| ❔   7 tests were ignored |#
!| ❗   1 tests had warnings |!

Details

❗ Test warnings:

readme - README contains the placeholder zenodo.XXXXXXX. This should be replaced with the zenodo doi (after the first release).

❔ Tests ignored:

files_exist - File is ignored: .github/workflows/ci.yml
files_exist - File is ignored: conf/igenomes.config
files_exist - File is ignored: conf/igenomes_ignored.config
files_unchanged - File ignored due to lint config: .github/PULL_REQUEST_TEMPLATE.md
files_unchanged - File ignored due to lint config: assets/nf-core-proteinannotator_logo_light.png
files_unchanged - File ignored due to lint config: docs/images/nf-core-proteinannotator_logo_light.png
files_unchanged - File ignored due to lint config: docs/images/nf-core-proteinannotator_logo_dark.png

✅ Tests passed:

files_exist - File found: .gitattributes
files_exist - File found: .gitignore
files_exist - File found: .nf-core.yml
files_exist - File found: .prettierignore
files_exist - File found: .prettierrc.yml
files_exist - File found: CHANGELOG.md
files_exist - File found: CITATIONS.md
files_exist - File found: CODE_OF_CONDUCT.md
files_exist - File found: LICENSE or LICENSE.md or LICENCE or LICENCE.md
files_exist - File found: nextflow_schema.json
files_exist - File found: nextflow.config
files_exist - File found: README.md
files_exist - File found: .github/.dockstore.yml
files_exist - File found: .github/CONTRIBUTING.md
files_exist - File found: .github/ISSUE_TEMPLATE/bug_report.yml
files_exist - File found: .github/ISSUE_TEMPLATE/config.yml
files_exist - File found: .github/ISSUE_TEMPLATE/feature_request.yml
files_exist - File found: .github/PULL_REQUEST_TEMPLATE.md
files_exist - File found: .github/workflows/branch.yml
files_exist - File found: .github/workflows/nf-test.yml
files_exist - File found: .github/actions/get-shards/action.yml
files_exist - File found: .github/actions/nf-test/action.yml
files_exist - File found: .github/workflows/linting_comment.yml
files_exist - File found: .github/workflows/linting.yml
files_exist - File found: assets/email_template.html
files_exist - File found: assets/email_template.txt
files_exist - File found: assets/sendmail_template.txt
files_exist - File found: assets/nf-core-proteinannotator_logo_light.png
files_exist - File found: conf/modules.config
files_exist - File found: conf/test.config
files_exist - File found: conf/test_full.config
files_exist - File found: docs/images/nf-core-proteinannotator_logo_light.png
files_exist - File found: docs/images/nf-core-proteinannotator_logo_dark.png
files_exist - File found: docs/output.md
files_exist - File found: docs/README.md
files_exist - File found: docs/README.md
files_exist - File found: docs/usage.md
files_exist - File found: nf-test.config
files_exist - File found: tests/default.nf.test
files_exist - File found: main.nf
files_exist - File found: assets/multiqc_config.yml
files_exist - File found: conf/base.config
files_exist - File found: .github/workflows/awstest.yml
files_exist - File found: .github/workflows/awsfulltest.yml
files_exist - File found: modules.json
files_exist - File found: ro-crate-metadata.json
files_exist - File not found check: .github/ISSUE_TEMPLATE/bug_report.md
files_exist - File not found check: .github/ISSUE_TEMPLATE/feature_request.md
files_exist - File not found check: .github/workflows/push_dockerhub.yml
files_exist - File not found check: .markdownlint.yml
files_exist - File not found check: .nf-core.yaml
files_exist - File not found check: .yamllint.yml
files_exist - File not found check: bin/markdown_to_html.r
files_exist - File not found check: conf/aws.config
files_exist - File not found check: docs/images/nf-core-proteinannotator_logo.png
files_exist - File not found check: lib/Checks.groovy
files_exist - File not found check: lib/Completion.groovy
files_exist - File not found check: lib/NfcoreTemplate.groovy
files_exist - File not found check: lib/Utils.groovy
files_exist - File not found check: lib/Workflow.groovy
files_exist - File not found check: lib/WorkflowMain.groovy
files_exist - File not found check: lib/WorkflowProteinannotator.groovy
files_exist - File not found check: parameters.settings.json
files_exist - File not found check: pipeline_template.yml
files_exist - File not found check: Singularity
files_exist - File not found check: lib/nfcore_external_java_deps.jar
files_exist - File not found check: .travis.yml
nextflow_config - Found nf-schema plugin
nextflow_config - Config variable found: manifest.name
nextflow_config - Config variable found: manifest.nextflowVersion
nextflow_config - Config variable found: manifest.description
nextflow_config - Config variable found: manifest.version
nextflow_config - Config variable found: manifest.homePage
nextflow_config - Config variable found: timeline.enabled
nextflow_config - Config variable found: trace.enabled
nextflow_config - Config variable found: report.enabled
nextflow_config - Config variable found: dag.enabled
nextflow_config - Config variable found: process.cpus
nextflow_config - Config variable found: process.memory
nextflow_config - Config variable found: process.time
nextflow_config - Config variable found: params.outdir
nextflow_config - Config variable found: params.input
nextflow_config - Config variable found: validation.help.enabled
nextflow_config - Config variable found: manifest.mainScript
nextflow_config - Config variable found: timeline.file
nextflow_config - Config variable found: trace.file
nextflow_config - Config variable found: report.file
nextflow_config - Config variable found: dag.file
nextflow_config - Config variable found: validation.help.beforeText
nextflow_config - Config variable found: validation.help.afterText
nextflow_config - Config variable found: validation.help.command
nextflow_config - Config variable found: validation.summary.beforeText
nextflow_config - Config variable found: validation.summary.afterText
nextflow_config - Config variable (correctly) not found: params.nf_required_version
nextflow_config - Config variable (correctly) not found: params.container
nextflow_config - Config variable (correctly) not found: params.singleEnd
nextflow_config - Config variable (correctly) not found: params.igenomesIgnore
nextflow_config - Config variable (correctly) not found: params.name
nextflow_config - Config variable (correctly) not found: params.enable_conda
nextflow_config - Config variable (correctly) not found: params.max_cpus
nextflow_config - Config variable (correctly) not found: params.max_memory
nextflow_config - Config variable (correctly) not found: params.max_time
nextflow_config - Config variable (correctly) not found: params.validationFailUnrecognisedParams
nextflow_config - Config variable (correctly) not found: params.validationLenientMode
nextflow_config - Config variable (correctly) not found: params.validationSchemaIgnoreParams
nextflow_config - Config variable (correctly) not found: params.validationShowHiddenParams
nextflow_config - Config timeline.enabled had correct value: true
nextflow_config - Config report.enabled had correct value: true
nextflow_config - Config trace.enabled had correct value: true
nextflow_config - Config dag.enabled had correct value: true
nextflow_config - Config manifest.name began with nf-core/
nextflow_config - Config variable manifest.homePage began with https://github.com/nf-core/
nextflow_config - Config dag.file ended with .html
nextflow_config - Config variable manifest.nextflowVersion started with >= or !>=
nextflow_config - Config manifest.version ends in dev: 1.0.0dev
nextflow_config - Config params.custom_config_version is set to master
nextflow_config - Config params.custom_config_base is set to https://raw.githubusercontent.com/nf-core/configs/master
nextflow_config - Lines for loading custom profiles found
nextflow_config - nextflow.config contains configuration profile test
nextflow_config - Config default value correct: params.skip_interproscan= false
nextflow_config - Config default value correct: params.interproscan_tar_gz= https://ftp.ebi.ac.uk/pub/software/unix/iprscan/5/5.74-105.0/interproscan-5.74-105.0-64-bit.tar.gz
nextflow_config - Config default value correct: params.custom_config_version= master
nextflow_config - Config default value correct: params.custom_config_base= https://raw.githubusercontent.com/nf-core/configs/master
nextflow_config - Config default value correct: params.publish_dir_mode= copy
nextflow_config - Config default value correct: params.max_multiqc_email_size= 25.MB
nextflow_config - Config default value correct: params.validate_params= true
nextflow_config - Config default value correct: params.pipelines_testdata_base_path= https://raw.githubusercontent.com/nf-core/test-datasets/
nf_test_content - 'tests/default.nf.test' contains outdir parameter
nf_test_content - 'tests/default.nf.test' snapshots a 'versions.yml' file
nf_test_content - 'tests/default.nf.test' snapshots a 'versions.yml' file
nf_test_content - 'tests/nextflow.config' contains modules_testdata_base_path
nf_test_content - 'tests/nextflow.config' contains pipelines_testdata_base_path
nf_test_content - 'nf-test.config' sets a testsDir
nf_test_content - 'nf-test.config' sets a workDir
nf_test_content - 'nf-test.config' sets a configFile
files_unchanged - .gitattributes matches the template
files_unchanged - .prettierrc.yml matches the template
files_unchanged - CODE_OF_CONDUCT.md matches the template
files_unchanged - LICENSE matches the template
files_unchanged - .github/.dockstore.yml matches the template
files_unchanged - .github/CONTRIBUTING.md matches the template
files_unchanged - .github/ISSUE_TEMPLATE/bug_report.yml matches the template
files_unchanged - .github/ISSUE_TEMPLATE/config.yml matches the template
files_unchanged - .github/ISSUE_TEMPLATE/feature_request.yml matches the template
files_unchanged - .github/workflows/branch.yml matches the template
files_unchanged - .github/workflows/linting_comment.yml matches the template
files_unchanged - .github/workflows/linting.yml matches the template
files_unchanged - assets/email_template.html matches the template
files_unchanged - assets/email_template.txt matches the template
files_unchanged - assets/sendmail_template.txt matches the template
files_unchanged - docs/README.md matches the template
files_unchanged - .gitignore matches the template
files_unchanged - .prettierignore matches the template
actions_nf_test - '.github/workflows/nf-test.yml' is triggered on expected events
actions_nf_test - '.github/workflows/nf-test.yml' checks minimum NF version
actions_awstest - '.github/workflows/awstest.yml' is triggered correctly
actions_awsfulltest - .github/workflows/awsfulltest.yml is triggered correctly
actions_awsfulltest - .github/workflows/awsfulltest.yml does not use -profile test
readme - README Nextflow minimum version badge matched config. Badge: 24.04.2, Config: 24.04.2
readme - README nf-core template version badge found.
pipeline_todos - No TODO strings found
pipeline_if_empty_null - No ifEmpty(null) strings found
plugin_includes - No wrong validation plugin imports have been found
pipeline_name_conventions - Name adheres to nf-core convention
template_strings - Did not find any Jinja template strings (0 files)
schema_lint - Schema lint passed
schema_lint - Schema title + description lint passed
schema_lint - Input mimetype lint passed: 'text/csv'
schema_params - Schema matched params returned from nextflow config
system_exit - No System.exit calls found
actions_schema_validation - Workflow validation passed: fix_linting.yml
actions_schema_validation - Workflow validation passed: clean-up.yml
actions_schema_validation - Workflow validation passed: download_pipeline.yml
actions_schema_validation - Workflow validation passed: linting.yml
actions_schema_validation - Workflow validation passed: nf-test.yml
actions_schema_validation - Workflow validation passed: awstest.yml
actions_schema_validation - Workflow validation passed: branch.yml
actions_schema_validation - Workflow validation passed: release-announcements.yml
actions_schema_validation - Workflow validation passed: awsfulltest.yml
actions_schema_validation - Workflow validation passed: linting_comment.yml
actions_schema_validation - Workflow validation passed: template-version-comment.yml
merge_markers - No merge markers found in pipeline files
modules_json - Only installed modules found in modules.json
multiqc_config - assets/multiqc_config.yml found and not ignored.
multiqc_config - assets/multiqc_config.yml contains report_section_order
multiqc_config - assets/multiqc_config.yml contains export_plots
multiqc_config - assets/multiqc_config.yml contains report_comment
multiqc_config - assets/multiqc_config.yml follows the ordering scheme of the minimally required plugins.
multiqc_config - assets/multiqc_config.yml contains a matching 'report_comment'.
multiqc_config - assets/multiqc_config.yml contains 'export_plots: true'.
modules_structure - modules directory structure is correct 'modules/nf-core/TOOL/SUBTOOL'
local_component_structure - local subworkflows directory structure is correct 'subworkflows/local/TOOL/SUBTOOL'
base_config - conf/base.config found and not ignored.
modules_config - conf/modules.config found and not ignored.
modules_config - MULTIQC found in conf/modules.config and Nextflow scripts.
modules_config - SEQKIT_STATS found in conf/modules.config and Nextflow scripts.
nfcore_yml - Repository type in .nf-core.yml is valid: pipeline
nfcore_yml - nf-core version in .nf-core.yml is set to the latest version: 3.3.1
rocrate_readme_sync - RO-Crate descriptions are in sync with README.md.

Run details

nf-core/tools version 3.3.1
Run at 2025-06-24 18:29:43

olgabot · 2025-03-25T18:45:24Z

Want to update InterProScan version of nf-modules first: nf-core/modules#8003

…rate_readme_sync" ???

1a6d9f2

…le test

olgabot · 2025-06-24T18:21:37Z

Turns out the tests were "randomly" failing because the *.tsv.gz and *.gff3.gz files from InterProScan include the date of the run, which changes every time:

395e782 adds helper functions to replace all date strings with placeholder text like: dd-mm-yyyy

olgabot added 2 commits March 24, 2025 11:41

Add interproscan

7041aea

Got test input to work

a64b602

olgabot added 3 commits March 25, 2025 10:04

Add Interproscan database

1f05fa1

Add test interproscan database

9748bb4

Add interproscan call

e655f6b

olgabot mentioned this pull request Mar 25, 2025

Remove nf-core fastqc module #11

Merged

11 tasks

heuermh and others added 20 commits March 25, 2025 14:33

Removing nf-core fastqc module

23f6a40

Fix lint errors

2afd15a

Remove fastqc references from docs

2a800e0

Remove withName:FASTQC from modules.config

beb277d

Don't validate single-ended-ness of fastas

7e9487b

Removing nf-core fastqc module

6c4a51c

Update example samplesheets

f339534

Update usage.md to show fasta files

554b4b9

Add interproscan but not fastqc module

f95c037

Add InterProScan to README

90dcb01

Add initial interproscan stub to output.md

90b7b76

Remove .zip for interproscan multiqc

5b4a02a

Use local interproscan database for now

c6f8361

Use quay nf-core/interproscan container

88bee23

Add local interproscan module

157a292

Move interproscan databases into reference database group

2ab00ca

Removing nf-core fastqc module

42cb44d

Fix meta

7aa973f

Install diamond/blastp

d18d639

Create FUNCTIONAL_ANNOTATION subworkflow skeleton

b4e16e3

nf-core-bot and others added 12 commits June 3, 2025 18:13

Template update for nf-core/tools version 3.3.1

0581e49

Add RO crate fix for nf-core pipeline lint

3e2bf19

Fix precommit in tests/nextflow.config

784967e

Merge branch 'dev' into olgabot/add-interproscan

339cd77

"nf-core pipelines lint --dir . --fix rocrate_readme_sync" .. again!

3b55fa8

Add CI options to stub tests

d586357

Add changes since hackathon to changelog

7cb0ccf

Add InterProcan, MMseqs2, mTM-Align to citations

ed3d71b

Finish the "..." on the README.

069226e

Update usage

deb02cb

Fix information about InterProScan database input in nextflow schema

f4e7b13

Why do I have to keep doing "nf-core pipelines lint --dir . --fix roc…

636cdb9

…rate_readme_sync" ???

maxulysse reviewed Jun 4, 2025

View reviewed changes

Comment thread subworkflows/local/utils_nfcore_proteinannotator_pipeline/tests/main.nf.test Outdated

olgabot added 11 commits June 4, 2025 11:35

Delete problematic main.nf.test

4082f50

Add magic NFT_DIFF environment variables from @maxulysse nf-core/rnaseq@

4e75092

1a6d9f2

Add printing file tree to get-shards action

7484c6b

Double quotes instead of single quotes

e89105c

Update contents of interproscan module test

c28582d

Move printing file tree to nf-test action instead of get-shards action

886723e

Increase depth of file tree printing to 6 (default is 5)

022751f

Increase depth to 10 to show EVERYTHING

d9cfdc5

Ignore interproscan data fixtures from prettier

19ee475

Force add interproscan test fixture data

8cca8ff

replace date strings in tsv, gff3 output files from interproscan modu…

395e782

…le test

olgabot added 2 commits June 24, 2025 11:24

Add tags: CI to nf-test.yml for 'run nf-test'

d9b4bf4

Add default outdir of ./results for test config

1287fc7

olgabot merged commit adf3815 into dev Jun 24, 2025
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olgabot mentioned this pull request Jun 24, 2025

Update InterProScan on metromap, add metromap changes to PR checklist #53

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vagkaratzas mentioned this pull request Feb 4, 2026

First pipeline release #71

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Add Interproscan#9

Add Interproscan#9
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nf-core pipelines lint overall result: Passed ✅ ⚠️

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olgabot commented Mar 24, 2025 •

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`nf-core pipelines lint` overall result: Passed ✅ ⚠️