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[WIP] Fix the failing GitHub Actions job 'nf-core'#642

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keiran-rowell-unsw with Copilot wants to merge 29 commits into
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copilot/fix-nf-core-github-actions-job
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[WIP] Fix the failing GitHub Actions job 'nf-core'#642
keiran-rowell-unsw with Copilot wants to merge 29 commits into
devfrom
copilot/fix-nf-core-github-actions-job

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Copilot AI commented Jul 20, 2026

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  • Investigate CI failure (utils_nfcore_pipeline local copy doesn't match remote)
  • Merge PR version.yml -> topic: channels migration #625 changes (topic channels migration) into copilot branch
  • Revert utils_nfcore_pipeline/main.nf to match remote (fixing lint failure)
  • Remove stray END_VERSIONS line in download_rna_rf2na/main.nf stub
  • Fix spelling 'Apease' → 'Appease' in main.nf comment
  • Reorder stub outputs in run_rosettafold2na/main.nf to match script order
  • Run parallel validation

keiran-rowell-unsw and others added 28 commits July 17, 2026 13:37
…e can't validate against 'toucht | asset metrics | use msa tool mapping
…elArchive step classes into the DUMMY_MODELCIF that has 20 residues | Use DUMMY_SOFTWARE_DETAILS
…g Boltz and Colabfold input and execution handling | AF3 code from CRG
…tection in topic: is same as others | Add the named _msa.tsv from contemporary approach to the RF2NA stub
Merges the topic: channels migration from PR #625 while reverting
the local modification to the nf-core module
subworkflows/nf-core/utils_nfcore_pipeline/main.nf, keeping it in sync
with the remote nf-core/modules repository to fix the lint failure:
'check_local_copy: Local copy of subworkflow does not match remote'
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