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mashehumashehu
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Merge pull request #1868 from BenjaminWehnert1008/deepmutscan
2 parents b5ea846 + 0b42f23 commit 0893bdb

10 files changed

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‎samplesheet/GID1A_test.csv‎

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sample,type,replicate,file1,file2
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GID1A,input,1,https://raw.githubusercontent.com/nf-core/test-datasets/deepmutscan/testdata/reads/GID1A_input1_50k_1.fastq.gz,https://raw.githubusercontent.com/nf-core/test-datasets/deepmutscan/testdata/reads/GID1A_input1_50k_2.fastq.gz
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GID1A,input,2,https://raw.githubusercontent.com/nf-core/test-datasets/deepmutscan/testdata/reads/GID1A_input2_50k_1.fastq.gz,https://raw.githubusercontent.com/nf-core/test-datasets/deepmutscan/testdata/reads/GID1A_input2_50k_2.fastq.gz
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GID1A,output,1,https://raw.githubusercontent.com/nf-core/test-datasets/deepmutscan/testdata/reads/GID1A_output1_50k_1.fastq.gz,https://raw.githubusercontent.com/nf-core/test-datasets/deepmutscan/testdata/reads/GID1A_output1_50k_2.fastq.gz
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GID1A,output,2,https://raw.githubusercontent.com/nf-core/test-datasets/deepmutscan/testdata/reads/GID1A_output2_50k_1.fastq.gz,https://raw.githubusercontent.com/nf-core/test-datasets/deepmutscan/testdata/reads/GID1A_output2_50k_2.fastq.gz

‎testdata/GID1A.fasta‎

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>GID1A_SUNI_ref_small
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GTCACGACGCTCACTAAAGGGAACAAAAGCTGGAGCTCATTTGGCGAGCGTTGGTTGGTGGATCAAGCCCACGCGTAGG
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CAATCCTCGAGCAGATCCGCCAGGCGTGTATATATAGCGTGGATGGCCAGGCAACTTTAGTGCTGACACATACAGGCAT
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ATATATATGTGTGCGACGACACATGATCATATGGCATGCATGTGCTCTGTATGTATATAAAACTCTTGTTTTCTTCTTT
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TCTCTAAATATTCTTTCCTTATACATTAGGACCTTTGCAGCATAAATTACTATACTTCTATAGACACGCAAACACAAAT
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ACACACACTAACGGGGCTGCTCTAGAATGGGATCCGCTGCGAGCGATGAAGTTAATCTTATTGAGAGCAGAACAGTGGT
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TCCTCTCAATACATGGGTTTTAATATCCAACTTCAAAGTAGCCTACAATATCCTTCGTCGCCCTGATGGAACCTTTAAC
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CGACACTTAGCTGAGTATCTAGACCGTAAAGTCACTGCAAACGCCAATCCGGTTGATGGGGTTTTCTCGTTCGATGTCT
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TGATTGATCGCAGGATCAATCTTCTAAGCAGAGTCTATAGACCAGCTTATGCAGATCAAGAGCAACCTCCTAGTATTTT
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AGATCTCGAGAAGCCTGTTGATGGCGACATTGTCCCTGTTATATTGTTCTTCCATGGAGGTAGCTTTGCTCATTCTTCT
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GCAAACAGTGCCATCTACGATACTCTTTGTCGCAGGCTTGTTGGTTTGTGCAAGTGTGTTGTTGTCTCTGTGAATTATC
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GGCGTGCACCAGAGAATCCATACCCTTGTGCTTATGATGATGGTTGGATTGCTCTTAATTGGGTTAACTCGAGATCTTG
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GCTTAAATCCAAGAAAGACTCAAAGGTCCATATTTTCTTGGCTGGTGATAGCTCTGGAGGTAACATCGCGCATAATGTG
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GCTTTAAGAGCGGGTGAATCGGGAATCGATGTTTTGGGGAACATTCTGCTGAATCCTATGTTTGGTGGGAATGAGAGAA
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CGGAGTCTGAGAAAAGTTTGGATGGGAAATACTTTGTGACGGTTAGAGACCGCGATTGGTACTGGAAAGCGTTTTTACC
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CGAGGGAGAAGATAGAGAGCATCCAGCGTGTAATCCGTTTAGCCCGAGAGGGAAGAGCTTAGAAGGAGTGAGTTTCCCC
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AAGAGTCTTGTGGTTGTCGCGGGTTTGGATTTGATTAGAGATTGGCAGTTGGCATACGCGGAAGGGCTCAAGAAAGCGG
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GTCAAGAGGTTAAACTTATGCATTTAGAGAAAGCAACTGTTGGGTTTTACCTCTTGCCTAATAACAATCATTTCCATAA
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TGTTATGGATGAGATTTCGGCGTTTGTAAACGCGGAATGTACTAGTGGAGGTGGTGGGTCAGGCGGAGGCGGGTCTGGA
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GGAGGTGGGTCAGGTGGAGGCGTTCGACCATTGAACTGCATCGTCGCCGTGTCCCAAAATATGGGGATTGGCAAGAACG
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GAGACTATCCCTGGCCTCCGCTCAGGAACGAGTCCAAGTACTTCCAAAGAATGACCACAACCTCTTCAGTGGAAGGTAA
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ACAGAATCTGGTGATTATGGGTAGGAAAACCTGGTTCTCCATTCCTGAGAAGAATCGACCTTTAAAGGACAGAATTAAT
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ATAGTTCTCAGTAGAGAACTCAAAGAACCACCACG

‎testdata/reads/GID1A_input1_50k_1.fastq.gz‎

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‎testdata/reads/GID1A_input1_50k_2.fastq.gz‎

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‎testdata/reads/GID1A_input2_50k_1.fastq.gz‎

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‎testdata/reads/GID1A_input2_50k_2.fastq.gz‎

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‎testdata/reads/GID1A_output1_50k_1.fastq.gz‎

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‎testdata/reads/GID1A_output1_50k_2.fastq.gz‎

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‎testdata/reads/GID1A_output2_50k_1.fastq.gz‎

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‎testdata/reads/GID1A_output2_50k_2.fastq.gz‎

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