Merge pull request #1899 from ninaxiong11/phyloanalysis

ninaxiong11 · web-flow · commit bffabd6fa1d9 · 2026-03-11T17:01:11.000-04:00
Add tests for SLAC and FEL
diff --git a/samplesheet/test_fel_samplesheet.csv b/samplesheet/test_fel_samplesheet.csv
@@ -0,0 +1,2 @@
+gene_name,alignment,tree,suite,tool                                                                    
+KSR2,https://raw.githubusercontent.com/nf-core/test-datasets/refs/heads/phyloanalysis/data/ksr2.fna,https://raw.githubusercontent.com/nf-core/test-datasets/refs/heads/phyloanalysis/data/ksr2.tree,hyphy,fel
diff --git a/samplesheet/test_samplesheet.csv b/samplesheet/test_samplesheet.csv
@@ -3,3 +3,5 @@ KSR2,https://raw.githubusercontent.com/nf-core/test-datasets/refs/heads/phyloana
 KSR2,https://raw.githubusercontent.com/nf-core/test-datasets/refs/heads/phyloanalysis/data/ksr2.fna,https://raw.githubusercontent.com/nf-core/test-datasets/refs/heads/phyloanalysis/data/ksr2.tree,hyphy,busted
 KSR2,https://raw.githubusercontent.com/nf-core/test-datasets/refs/heads/phyloanalysis/data/ksr2.fna,https://raw.githubusercontent.com/nf-core/test-datasets/refs/heads/phyloanalysis/data/ksr2.tree,hyphy,meme
 KSR2,https://raw.githubusercontent.com/nf-core/test-datasets/refs/heads/phyloanalysis/data/ksr2.fna,https://raw.githubusercontent.com/nf-core/test-datasets/refs/heads/phyloanalysis/data/ksr2_labeled_test_reference.tree,hyphy,relax
+KSR2,https://raw.githubusercontent.com/nf-core/test-datasets/refs/heads/phyloanalysis/data/ksr2.fna,https://raw.githubusercontent.com/nf-core/test-datasets/refs/heads/phyloanalysis/data/ksr2.tree,hyphy,fel
+KSR2,https://raw.githubusercontent.com/nf-core/test-datasets/refs/heads/phyloanalysis/data/ksr2.fna,https://raw.githubusercontent.com/nf-core/test-datasets/refs/heads/phyloanalysis/data/ksr2.tree,hyphy,slac
diff --git a/samplesheet/test_slac_samplesheet.csv b/samplesheet/test_slac_samplesheet.csv
@@ -0,0 +1,2 @@
+gene_name,alignment,tree,suite,tool
+KSR2,https://raw.githubusercontent.com/nf-core/test-datasets/refs/heads/phyloanalysis/data/ksr2.fna,https://raw.githubusercontent.com/nf-core/test-datasets/refs/heads/phyloanalysis/data/ksr2.tree,hyphy,slac

Original file line number	Diff line number	Diff line change
`@@ -0,0 +1,2 @@`
	`1`	`+gene_name,alignment,tree,suite,tool`
	`2`	`+KSR2,https://raw.githubusercontent.com/nf-core/test-datasets/refs/heads/phyloanalysis/data/ksr2.fna,https://raw.githubusercontent.com/nf-core/test-datasets/refs/heads/phyloanalysis/data/ksr2.tree,hyphy,fel`