Merge pull request #1896 from ninaxiong11/phyloanalysis

ninaxiong11 · web-flow · commit d79dbdffb543 · 2026-03-11T11:47:18.000-04:00
Added test data for phyloanalysis
diff --git a/data/ksr2.fna b/data/ksr2.fna
diff --git a/data/ksr2.tree b/data/ksr2.tree
@@ -0,0 +1 @@
+(((((((HUM, PAN), GOR), PON), GIB), (MAC, BAB)), MAR), BUS);
diff --git a/data/ksr2_labeled_test_reference.tree b/data/ksr2_labeled_test_reference.tree
@@ -0,0 +1 @@
+(((((((HUM{test}, PAN{reference}), GOR), PON), GIB), (MAC, BAB)), MAR), BUS);
diff --git a/samplesheet/test_absrel_samplesheet.csv b/samplesheet/test_absrel_samplesheet.csv
@@ -0,0 +1,2 @@
+gene_name,alignment,tree,suite,tool
+KSR2,./tests/data/ksr2.fna,./tests/data/ksr2.tree,hyphy,absrel
diff --git a/samplesheet/test_busted_samplesheet.csv b/samplesheet/test_busted_samplesheet.csv
@@ -0,0 +1,2 @@
+gene_name,alignment,tree,suite,tool
+KSR2,./tests/data/ksr2.fna,./tests/data/ksr2.tree,hyphy,busted
diff --git a/samplesheet/test_meme_samplesheet.csv b/samplesheet/test_meme_samplesheet.csv
@@ -0,0 +1,2 @@
+gene_name,alignment,tree,suite,tool
+KSR2,./tests/data/ksr2.fna,./tests/data/ksr2.tree,hyphy,meme
diff --git a/samplesheet/test_relax_samplesheet.csv b/samplesheet/test_relax_samplesheet.csv
@@ -0,0 +1,2 @@
+gene_name,alignment,tree,suite,tool
+KSR2,./tests/data/ksr2.fna,./tests/data/ksr2_labeled_test_reference.tree,hyphy,relax
diff --git a/samplesheet/test_samplesheet.csv b/samplesheet/test_samplesheet.csv
@@ -0,0 +1,5 @@
+gene_name,alignment,tree,suite,tool
+KSR2,./tests/data/ksr2.fna,./tests/data/ksr2.tree,hyphy,absrel
+KSR2,./tests/data/ksr2.fna,./tests/data/ksr2.tree,hyphy,busted
+KSR2,./tests/data/ksr2.fna,./tests/data/ksr2.tree,hyphy,meme
+KSR2,./tests/data/ksr2.fna,./tests/data/ksr2_labeled_test_reference.tree,hyphy,relax

Original file line number	Diff line number	Diff line change
`@@ -0,0 +1 @@`
	`1`	`+(((((((HUM, PAN), GOR), PON), GIB), (MAC, BAB)), MAR), BUS);`
Original file line number	Diff line number	Diff line change
`@@ -0,0 +1 @@`
	`1`	`+(((((((HUM{test}, PAN{reference}), GOR), PON), GIB), (MAC, BAB)), MAR), BUS);`
Original file line number	Diff line number	Diff line change
`@@ -0,0 +1,2 @@`
	`1`	`+gene_name,alignment,tree,suite,tool`
	`2`	`+KSR2,./tests/data/ksr2.fna,./tests/data/ksr2.tree,hyphy,absrel`