Further subsetted the testdata files

Author: Vicbeg

samplesheet/samplesheet_SHAPE_RT-stop.csv

@@ -1,3 +1,3 @@
 sample,sample_id,fastq_1,fastq_2,method,principle,cell_line,condition,replicate,organism,pH,adapter_3p,adapter_5p,umi_pattern
-HEK293T_untreated_r1,GSM4333255,https://github.com/nf-core/test-datasets/raw/refs/heads/rnastructurome/testdata/GSM4333255.R1.HEK293T_untreated_r1.trim.subset.fastq.gz,,SHAPE,RT-stop,HEK293T,untreated,1,Homo sapiens,7.5,,,
-HEK293T_treated_r1,GSM4333256,https://github.com/nf-core/test-datasets/raw/refs/heads/rnastructurome/testdata/GSM4333256.R1.HEK293T_treated_r1.trim.subset.fastq.gz,,SHAPE,RT-stop,HEK293T,treated,1,Homo sapiens,7.5,,,
+HEK293T_untreated_r1,GSM4333255,https://github.com/nf-core/test-datasets/raw/refs/heads/rnastructurome/testdata/SHAPE_RT-stop/GSM4333255.R1.HEK293T_untreated_r1.trim.top1.fastq.gz,,SHAPE,RT-stop,HEK293T,untreated,1,Homo sapiens,7.5,,,
+HEK293T_treated_r1,GSM4333256,https://github.com/nf-core/test-datasets/raw/refs/heads/rnastructurome/testdata/SHAPE_RT-stop/GSM4333256.R1.HEK293T_treated_r1.trim.top1.fastq.gz,,SHAPE,RT-stop,HEK293T,treated,1,Homo sapiens,7.5,,,

testdata/GSM4333255.R1.HEK293T_untreated_r1.trim.subset.fastq.gz

@@ -0,0 +1,17 @@
+>ENST00000389680.2
+AATAGGTTTGGTCCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGCAAGCATCCC
+CGTTCCAGTGAGTTCACCCTCTAAATCACCACGATCAAAAGGAACAAGCATCAAGCACGC
+AGCAATGCAGCTCAAAACGCTTAGCCTAGCCACACCCCCACGGGAAACAGCAGTGATTAA
+CCTTTAGCAATAAACGAAAGTTTAACTAAGCTATACTAACCCCAGGGTTGGTCAATTTCG
+TGCCAGCCACCGCGGTCACACGATTAACCCAAGTCAATAGAAGCCGGCGTAAAGAGTGTT
+TTAGATCACCCCCTCCCCAATAAAGCTAAAACTCACCTGAGTTGTAAAAAACTCCAGTTG
+ACACAAAATAGACTACGAAAGTGGCTTTAACATATCTGAACACACAATAGCTAAGACCCA
+AACTGGGATTAGATACCCCACTATGCTTAGCCCTAAACCTCAACAGTTAAATCAACAAAA
+CTGCTCGCCAGAACACTACGAGCCACAGCTTAAAACTCAAAGGACCTGGCGGTGCTTCAT
+ATCCCTCTAGAGGAGCCTGTTCTGTAATCGATAAACCCCGATCAACCTCACCACCTCTTG
+CTCAGCCTATATACCGCCATCTTCAGCAAACCCTGATGAAGGCTACAAAGTAAGCGCAAG
+TACCCACGTAAAGACGTTAGGTCAAGGTGTAGCCCATGAGGTGGCAAGAAATGGGCTACA
+TTTTCTACCCCAGAAAACTACGATAGCCCTTATGAAACTTAAGGGTCGAAGGTGGATTTA
+GCAGTAAACTAAGAGTAGAGTGCTTAGTTGAACAGGGCCCTGAAGCGCGTACACACCGCC
+CGTCACCCTCCTCAAGTATACTTCAAAGGACATTTAACTAAAACCCCTACGCATTTATAT
+AGAGGAGACAAGTCGTAACATGGTAAGTGTACTGGAAAGTGCACTTGGACGAAC