Add initial set of test data, using nf-core/rnaseq's test data

Author: thomasisensee

README.md

@@ -1,39 +1,8 @@
-# ![nfcore/test-datasets](docs/images/test-datasets_logo.png)
+# test-datasets: `genomicrelatedness`
 
-Test data to be used for automated testing with the nf-core pipelines
+This branch contains test data to be used for automated testing with the [nf-core/genomicrelatedness](https://github.com/nf-core/genomicrelatedness) pipeline.
 
-> ⚠️ **Do not merge your test data to `master`! Each pipeline has a dedicated branch (and a special one for modules)**
+## Content of this repository
 
-## Introduction
-
-nf-core is a collection of high quality Nextflow pipelines. This repository contains various files for CI and unit testing of nf-core pipelines and infrastructure.
-
-The principle for nf-core test data is as small as possible, as large as necessary. Please see the [guidelines](https://nf-co.re/docs/contributing/test_data_guidelines) for more detailed information. Always ask for guidance on the [nf-core slack](https://nf-co.re/join) before adding new test data.
-
-## Documentation
-
-nf-core/test-datasets comes with documentation in the `docs/` directory:
-
-1.  [Add a new test dataset](https://github.com/nf-core/test-datasets/blob/master/docs/ADD_NEW_DATA.md)
-2.  [Use an existing test dataset](https://github.com/nf-core/test-datasets/blob/master/docs/USE_EXISTING_DATA.md)
-
-## Downloading test data
-
-Due the large number of large files in this repository for each pipeline, we highly recommend cloning only the branches you would use.
-
-```bash
-git clone <url> --single-branch --branch <pipeline/modules/branch_name>
-```
-
-To subsequently clone other branches[^1]
-
-```bash
-git remote set-branches --add origin [remote-branch]
-git fetch
-```
-
-## Support
-
-For further information or help, don't hesitate to get in touch on our [Slack organisation](https://nf-co.re/join/slack) (a tool for instant messaging).
-
-[^1]: From [stackoverflow](https://stackoverflow.com/a/60846265/11502856)
+`data/high_conf.vcf.gz`: Substitute for a high-confidence variant set. This file is created during a standard workflow of this pipeline using [nf-core/rnaseq's](https://github.com/nf-core/rnaseq) test samples
+`samplesheet/samplesheet.csv`: Samplesheet containing some of [nf-core/rnaseq's](https://github.com/nf-core/rnaseq) test samples

data/high_conf.vcf.gz

@@ -0,0 +1,4 @@
+sample,fastq_1,fastq_2,RGID,RGLB,RGPL,RGPU,RGSM
+WT_REP1,https://raw.githubusercontent.com/nf-core/test-datasets/rnaseq/testdata/GSE110004/SRR6357070_1.fastq.gz,https://raw.githubusercontent.com/nf-core/test-datasets/rnaseq/testdata/GSE110004/SRR6357070_2.fastq.gz,1,lib1,test,A,WT_REP1_A
+WT_REP1,https://raw.githubusercontent.com/nf-core/test-datasets/rnaseq/testdata/GSE110004/SRR6357071_1.fastq.gz,https://raw.githubusercontent.com/nf-core/test-datasets/rnaseq/testdata/GSE110004/SRR6357071_2.fastq.gz,2,lib1,test,B,WT_REP1_B
+WT_REP2,https://raw.githubusercontent.com/nf-core/test-datasets/rnaseq/testdata/GSE110004/SRR6357072_1.fastq.gz,https://raw.githubusercontent.com/nf-core/test-datasets/rnaseq/testdata/GSE110004/SRR6357072_2.fastq.gz,1,lib1,test,C,WT_REP2_C