Add full-size test samplesheets for spatialvi (Visium v1/v2 + Visium HD)#2114
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cavenel merged 3 commits intoJun 24, 2026
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mashehu
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Jun 23, 2026
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also please document them in the readme
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Thanks for pointing that, it's now done! |
mashehu
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Jun 23, 2026
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| | Samplesheet | Dataset | Chemistry | | ||
| | --- | --- | --- | | ||
| | [`human-ovarian-cancer-1-standard_v1_ffpe/samplesheet_full.csv`](testdata/human-ovarian-cancer-1-standard_v1_ffpe/samplesheet_full.csv) | Human ovarian cancer 1, FFPE direct placement | Visium v1 | |
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is there any doi or publication connected to these samples?
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No, only 10x fixed url like https://www.10xgenomics.com/datasets/human-ovarian-cancer-1-standard
I could add a "Data licensing" section if we want to add the "This dataset is licensed under the Creative Commons Attribution 4.0 International (CC BY 4.0) license. 10x citation guidelines available here" part.
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@nf-core-bot fix linting |
mashehu
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Jun 24, 2026
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Adds
samplesheet_full.csvto three existing test-data dirs for the new full-size pipeline profiles (test_full,test_full_v1,test_full_hd).Heavy files (FASTQ
.tar, images, slide.gpr) stream directly from 10x Genomics, so only the small samplesheets are hosted here. Companion pipeline PR to follow in nf-core/spatialvi.