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Add test data for nf-core/rnastructurome#1990

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Vicbeg merged 3 commits into
nf-core:rnastructuromefrom
Vicbeg:rnastructurome
Jun 30, 2026
Merged

Add test data for nf-core/rnastructurome#1990
Vicbeg merged 3 commits into
nf-core:rnastructuromefrom
Vicbeg:rnastructurome

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@Vicbeg

@Vicbeg Vicbeg commented Apr 14, 2026

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Add a small subset test dataset for the nf-core/rnastructurome pipeline.

The test data consists of:

  • Trimmed FASTQ files (SHAPE RT-stop experiment, HEK293T cells)
  • Reference genome subset (Homo sapiens GRCh38)

A samplesheet (samplesheet_SHAPE_RT-stop.csv) is also included, which describes the samples and is required as input by the pipeline.

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this is way to big. we are trying to keep the data as small as possible (at least 1MB). can you subset these fastq files further?

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I have further subsetted the fastq files to the smallest they can be and still go through the whole pipeline.

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awesome, thanks! could you please drop the previous commit, to avoid having the large file in the git history.

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Done!

@mashehu mashehu left a comment

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please add documentation about the test files and their origin to the readme.

@Vicbeg

Vicbeg commented Jun 30, 2026

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Done. Am I okay to merge? Thanks!

@Vicbeg Vicbeg merged commit 3290d66 into nf-core:rnastructurome Jun 30, 2026
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2 participants