diff --git a/data/genomics/homo_sapiens/1000g_phase3_plink2_pca/README.md b/data/genomics/homo_sapiens/1000g_phase3_plink2_pca/README.md new file mode 100644 index 000000000..3bb08b124 --- /dev/null +++ b/data/genomics/homo_sapiens/1000g_phase3_plink2_pca/README.md @@ -0,0 +1,4 @@ +Small test VCF from 1000 Genomes Phase 3 (~100 samples × ~1000 SNPs). + +Intended for testing the nf-core/snpclustering pipeline +(PCA + clustering downstream analysis). diff --git a/data/genomics/homo_sapiens/1000g_phase3_plink2_pca/test.vcf.gz b/data/genomics/homo_sapiens/1000g_phase3_plink2_pca/test.vcf.gz new file mode 100644 index 000000000..228f52ecb Binary files /dev/null and b/data/genomics/homo_sapiens/1000g_phase3_plink2_pca/test.vcf.gz differ diff --git a/data/genomics/homo_sapiens/1000g_phase3_plink2_pca/test.vcf.gz.tbi b/data/genomics/homo_sapiens/1000g_phase3_plink2_pca/test.vcf.gz.tbi new file mode 100644 index 000000000..6eeaa5619 Binary files /dev/null and b/data/genomics/homo_sapiens/1000g_phase3_plink2_pca/test.vcf.gz.tbi differ diff --git a/data/genomics/homo_sapiens/1000g_phase3_small/README.md b/data/genomics/homo_sapiens/1000g_phase3_small/README.md new file mode 100644 index 000000000..44e643d08 --- /dev/null +++ b/data/genomics/homo_sapiens/1000g_phase3_small/README.md @@ -0,0 +1,4 @@ +Small test VCF from 1000 Genomes Phase 3 (~100 samples × ~1000 SNPs). + +Intended for testing the nf-core/snpclustering pipeline +(PCA + clustering downstream analysis with plink2).