Skip to content

feat(gtdbtk): add new r232 gtdbtk database#2039

Merged
prototaxites merged 5 commits into
nf-core:magfrom
prototaxites:mag_gtdbtk_new
May 7, 2026
Merged

feat(gtdbtk): add new r232 gtdbtk database#2039
prototaxites merged 5 commits into
nf-core:magfrom
prototaxites:mag_gtdbtk_new

Conversation

@prototaxites
Copy link
Copy Markdown

@prototaxites prototaxites commented May 7, 2026

Adds the new test database for GTDBTk 2.7+, compatible with the new r232 release.

@mashehu
Copy link
Copy Markdown
Contributor

mashehu commented May 7, 2026

don't forget to update the readme as well

@prototaxites
Copy link
Copy Markdown
Author

Good call! Done.

Copy link
Copy Markdown
Contributor

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

i am guessing there is no chance in making this even smaller?

Copy link
Copy Markdown
Author

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

This is the small version of the 56Gb database the tool requires, as provided by the developers. I think it's about as minimal as can be...

@prototaxites prototaxites merged commit 97086ec into nf-core:mag May 7, 2026
1 check passed
@prototaxites prototaxites deleted the mag_gtdbtk_new branch May 7, 2026 13:24
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

2 participants