Skip to content

Commit 3d39de4

Browse files
nf-core-botnf-core-bot
committed
[automated] Update json files
1 parent 071dfc5 commit 3d39de4

2 files changed

Lines changed: 235 additions & 54 deletions

File tree

‎public/components.json‎

Lines changed: 203 additions & 22 deletions
Original file line numberDiff line numberDiff line change
@@ -335258,19 +335258,51 @@
335258335258
}
335259335259
]
335260335260
],
335261+
"versions_taxpasta": [
335262+
[
335263+
{
335264+
"${task.process}": {
335265+
"type": "string",
335266+
"description": "The name of the process"
335267+
}
335268+
},
335269+
{
335270+
"taxpasta": {
335271+
"type": "string",
335272+
"description": "The name of the tool"
335273+
}
335274+
},
335275+
{
335276+
"taxpasta --version": {
335277+
"type": "eval",
335278+
"description": "The expression to obtain the version of the tool"
335279+
}
335280+
}
335281+
]
335282+
]
335283+
},
335284+
"topics": {
335261335285
"versions": [
335262-
{
335263-
"versions.yml": {
335264-
"type": "file",
335265-
"description": "File containing software versions",
335266-
"pattern": "versions.yml",
335267-
"ontologies": [
335268-
{
335269-
"edam": "http://edamontology.org/format_3750"
335270-
}
335271-
]
335286+
[
335287+
{
335288+
"${task.process}": {
335289+
"type": "string",
335290+
"description": "The name of the process"
335291+
}
335292+
},
335293+
{
335294+
"taxpasta": {
335295+
"type": "string",
335296+
"description": "The name of the tool"
335297+
}
335298+
},
335299+
{
335300+
"taxpasta --version": {
335301+
"type": "eval",
335302+
"description": "The expression to obtain the version of the tool"
335303+
}
335272335304
}
335273-
}
335305+
]
335274335306
]
335275335307
},
335276335308
"authors": [
@@ -335387,19 +335419,51 @@
335387335419
}
335388335420
]
335389335421
],
335422+
"versions_taxpasta": [
335423+
[
335424+
{
335425+
"${task.process}": {
335426+
"type": "string",
335427+
"description": "The name of the process"
335428+
}
335429+
},
335430+
{
335431+
"taxpasta": {
335432+
"type": "string",
335433+
"description": "The name of the tool"
335434+
}
335435+
},
335436+
{
335437+
"taxpasta --version": {
335438+
"type": "eval",
335439+
"description": "The expression to obtain the version of the tool"
335440+
}
335441+
}
335442+
]
335443+
]
335444+
},
335445+
"topics": {
335390335446
"versions": [
335391-
{
335392-
"versions.yml": {
335393-
"type": "file",
335394-
"description": "File containing software versions",
335395-
"pattern": "versions.yml",
335396-
"ontologies": [
335397-
{
335398-
"edam": "http://edamontology.org/format_3750"
335399-
}
335400-
]
335447+
[
335448+
{
335449+
"${task.process}": {
335450+
"type": "string",
335451+
"description": "The name of the process"
335452+
}
335453+
},
335454+
{
335455+
"taxpasta": {
335456+
"type": "string",
335457+
"description": "The name of the tool"
335458+
}
335459+
},
335460+
{
335461+
"taxpasta --version": {
335462+
"type": "eval",
335463+
"description": "The expression to obtain the version of the tool"
335464+
}
335401335465
}
335402-
}
335466+
]
335403335467
]
335404335468
},
335405335469
"authors": [
@@ -355280,6 +355344,123 @@
355280355344
]
355281355345
}
355282355346
},
355347+
{
355348+
"name": "vcontact3_prepareddatabases",
355349+
"path": "modules/nf-core/vcontact3/prepareddatabases/meta.yml",
355350+
"type": "module",
355351+
"meta": {
355352+
"name": "vcontact3_prepareddatabases",
355353+
"description": "Prepare and format databases for vCONTACT3 viral taxonomic analysis",
355354+
"keywords": [
355355+
"virus",
355356+
"database",
355357+
"genomics",
355358+
"clustering",
355359+
"vcontact3"
355360+
],
355361+
"tools": [
355362+
{
355363+
"vcontact3": {
355364+
"description": "Scalable and systematic hierarchical virus taxonomy with vCONTACT3",
355365+
"homepage": "https://bitbucket.org/MAVERICLab/vcontact3/src/master/README.md",
355366+
"documentation": "https://bitbucket.org/MAVERICLab/vcontact3/src/master/README.md",
355367+
"tool_dev_url": "https://vcontact3.readthedocs.io/en/latest/",
355368+
"doi": "10.1101/2025.11.06.686974",
355369+
"licence": [
355370+
"CC-BY-4.0"
355371+
],
355372+
"identifier": "biotools:vcontact3"
355373+
}
355374+
}
355375+
],
355376+
"input": [
355377+
[
355378+
{
355379+
"meta": {
355380+
"type": "map",
355381+
"description": "Groovy Map containing sample information\ne.g. `[ id:'test' ]`\n"
355382+
}
355383+
},
355384+
{
355385+
"db_version": {
355386+
"type": "integer",
355387+
"description": "The database version number to download and prepare (e.g. 'latest')"
355388+
}
355389+
}
355390+
]
355391+
],
355392+
"output": {
355393+
"database": [
355394+
[
355395+
{
355396+
"meta": {
355397+
"type": "map",
355398+
"description": "Groovy Map containing sample information\ne.g. `[ id:'test' ]`\n"
355399+
}
355400+
},
355401+
{
355402+
"${prefix}/": {
355403+
"type": "directory",
355404+
"description": "Directory containing the downloaded and formatted vConTACT3 databases"
355405+
}
355406+
}
355407+
]
355408+
],
355409+
"versions_vcontact3": [
355410+
[
355411+
{
355412+
"${task.process}": {
355413+
"type": "string",
355414+
"description": "The name of the process"
355415+
}
355416+
},
355417+
{
355418+
"vcontact3": {
355419+
"type": "string",
355420+
"description": "The name of the tool"
355421+
}
355422+
},
355423+
{
355424+
"vcontact3 version": {
355425+
"type": "eval",
355426+
"description": "The expression to obtain the version of the tool"
355427+
}
355428+
}
355429+
]
355430+
]
355431+
},
355432+
"topics": {
355433+
"versions": [
355434+
[
355435+
{
355436+
"${task.process}": {
355437+
"type": "string",
355438+
"description": "The name of the process"
355439+
}
355440+
},
355441+
{
355442+
"vcontact3": {
355443+
"type": "string",
355444+
"description": "The name of the tool"
355445+
}
355446+
},
355447+
{
355448+
"vcontact3 version": {
355449+
"type": "eval",
355450+
"description": "The expression to obtain the version of the tool"
355451+
}
355452+
}
355453+
]
355454+
]
355455+
},
355456+
"authors": [
355457+
"@olawal1001"
355458+
],
355459+
"maintainers": [
355460+
"@olawal1001"
355461+
]
355462+
}
355463+
},
355283355464
{
355284355465
"name": "velocyto",
355285355466
"path": "modules/nf-core/velocyto/meta.yml",

0 commit comments

Comments
 (0)