Create a global parameters list
Terminology between pipelines and shared assets can differ. To help preserve shared content and familiarity between pipelines, subworkflows and modules, it would be beneficial to create a reserved ontology. For example, parameter names such as --bwa_index and --bwa should be reserved.
A reserved ontology list needs to be created. There might be example from elsewhere we could use to start. We could also scrape all JSON schema files and build a big list (link to it in the writing pipelines tutorial). Final product could be a list with clear descriptions that can be used by developers to guide naming conventions.
Create a global parameters list
Terminology between pipelines and shared assets can differ. To help preserve shared content and familiarity between pipelines, subworkflows and modules, it would be beneficial to create a reserved ontology. For example, parameter names such as
--bwa_indexand--bwashould be reserved.A reserved ontology list needs to be created. There might be example from elsewhere we could use to start. We could also scrape all JSON schema files and build a big list (link to it in the writing pipelines tutorial). Final product could be a list with clear descriptions that can be used by developers to guide naming conventions.