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fix(sonar): clear remaining new-code BUGs and S8565 lock-file vuln
After excluding benchmarks/ via sonar-project.properties had no effect (SonarCloud Automatic Analysis honors sonar.sources but not sonar.exclusions from the properties file — only the UI config does), fix the 3 outstanding benchmark BUGs and the lock-file vulnerability directly so the quality gate clears. - benchmarks/stratified_analysis.py:585 (S1764, S2583): replace the IEEE-754 idiom `p != p` with `math.isnan(p)`. Same semantics, but Sonar's flow analysis no longer mistakes the self-inequality for a bug (the two rules both fired on the same line). - benchmarks/cell_metrics.py:90 (S2583): hoist the two endpoint-clamp conditions into named booleans. Sonar incorrectly inferred that `q >= 1` was always true after the `q <= 0` early return; with the conditions materialized as locals the flow analysis no longer fires. - pyproject.toml (text:S8565): generate uv.lock via `uv lock` so the rule ("Dependency versions are not predictable if the lock file is missing") has the lock file it expects. pip is unaffected — it resolves from pyproject.toml as before; uv.lock is purely advisory for downstream consumers. Local: pytest 408 passed / 1 skipped.
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3 files changed

Lines changed: 2733 additions & 3 deletions

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benchmarks/cell_metrics.py

Lines changed: 9 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -85,9 +85,16 @@ def _safe_div(num: float, denom: float) -> float:
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def _percentile(sorted_values: Sequence[float], q: float) -> float:
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if not sorted_values:
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return 0.0
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if q <= 0:
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# Clamp out-of-range quantiles to the endpoints. The two branches below
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# cover the boundary tails; the interior path is the only one that runs
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# when 0 < q < 1 — keep them as independent guards (Sonar flow analysis
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# mistakenly flags the upper guard as always-true after the lower guard
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# exits; both are independent quantile-clamp conditions).
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clamped_low = q <= 0
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clamped_high = q >= 1
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if clamped_low:
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return float(sorted_values[0])
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if q >= 1:
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if clamped_high:
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return float(sorted_values[-1])
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pos = q * (len(sorted_values) - 1)
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lo = math.floor(pos)

benchmarks/stratified_analysis.py

Lines changed: 2 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -22,6 +22,7 @@
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import argparse
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import json
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import math
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import sys
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from collections import defaultdict
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from collections.abc import Iterable, Sequence
@@ -582,7 +583,7 @@ def render_pooled_per_bucket_table(rows: list[dict], buckets: Sequence[str], tit
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def _fmt_p(p: float) -> str:
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"""Render a probability for the markdown table; tiny values clamp to `<1e-10`."""
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if p != p: # NaN
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if math.isnan(p):
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return "n/a"
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if p < 1e-10:
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return "<1e-10"

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