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| 1 | +# NIM Technology Lab Sensor Sync API |
| 2 | + |
| 3 | +<!-- vim-markdown-toc GFM --> |
| 4 | + |
| 5 | +* [0. Introduction](#0-introduction) |
| 6 | +* [1. Configuring the device](#1-configuring-the-device) |
| 7 | + * [1.1 Restoring the default configuration](#11-restoring-the-default-configuration) |
| 8 | +* [2. APIs](#2-apis) |
| 9 | +* [2.1 Python API](#21-python-api) |
| 10 | + * [2.1.1 Prerequisites](#211-prerequisites) |
| 11 | + * [2.1.1.1 The pipenv way](#2111-the-pipenv-way) |
| 12 | + * [2.1.1.2 Without pipenv](#2112-without-pipenv) |
| 13 | + * [2.1.2 Examples](#212-examples) |
| 14 | +* [2.2 Python API (type-checked)](#22-python-api-type-checked) |
| 15 | + * [2.2.1 Prerequisites](#221-prerequisites) |
| 16 | + * [2.2.2 Examples](#222-examples) |
| 17 | +* [2.3 Javascript API](#23-javascript-api) |
| 18 | + * [2.3.1 Examples](#231-examples) |
| 19 | + |
| 20 | +<!-- vim-markdown-toc --> |
| 21 | + |
| 22 | +## 0. Introduction |
| 23 | + |
| 24 | + |
| 25 | +The NIM Sensor Sync device was designed to enable easy real-time synchronization of sensor data and lab experiment |
| 26 | +(online) software. This is necessary since sensor data capturing devices or software and the experiment software can run |
| 27 | +on different systems and produce separate data streams. An online experiment might produce a .CSV file or log file on |
| 28 | +the web server - whereas the sensor capturing software might run on a proband-facing laptop in the lab, producing a |
| 29 | +different CSV file. Synchronizing these two data streams: from the experiment software and from the sensor data |
| 30 | +capturing software is essential for correlation of sensor data to events during a lab experiment. |
| 31 | + |
| 32 | +The NIM Sensor Sync provides electrical sensor interfaces that can be controlled over the network via HTTP. Sensor |
| 33 | +capturing devices such as a biosignalsplux sensor hub can capture the state of these networked sensor outputs that in |
| 34 | +turn are controlled by the experiment software via an easy HTTP API. |
| 35 | + |
| 36 | +Using the networked sensor outputs, the experiment software can send synchronization pulses to the sensor capturing |
| 37 | +device. That way, it can place marks in the sensor data - e.g. when a proband started interacting with the experiment |
| 38 | +software, pressed a certain button, started watching a video, etc. |
| 39 | + |
| 40 | +One NIM Sensor Sync device provides 8 networked sensor outputs. The following illustration shows an exemplary setup, |
| 41 | +where two lab seats are equipped with a laptop and two different sensors each. All sensors are connected to a 6-channel |
| 42 | +sensor hub. For synchronization, two inputs of the sensor hub - one for each proband laptop - are connected to the NIM |
| 43 | +Sensor Sync's sensor outputs. The Sensor Sync device is connected to the Ethernet network, as are all proband laptops |
| 44 | +and the master PC for the experiment administrator. In this scenario, sensor data synchronization "mark" requests can be |
| 45 | +sent either by the web server running the experiment backend on the master PC or by the web browsers of the proband |
| 46 | +laptops during the experiment. |
| 47 | + |
| 48 | + |
| 49 | + |
| 50 | +## 1. Configuring the device |
| 51 | + |
| 52 | +Use [the configuration tool](./sample.html). You can run it by opening it ([sample.html](sample.html)) in a browser, no |
| 53 | +HTTP server required. |
| 54 | + |
| 55 | +This tool allows you to: |
| 56 | + |
| 57 | +- configure a connected device's IP address |
| 58 | +- configure a connected device's MAC address |
| 59 | +- reboot a connected device -> IP and MAC changes take effect |
| 60 | +- read current config (including sensor states) |
| 61 | +- change sensor states (outputs) |
| 62 | + |
| 63 | +### 1.1 Restoring the default configuration |
| 64 | +The default configuration: |
| 65 | + |
| 66 | +- IP: `192.168.2.49` |
| 67 | +- MAC: `CA.FE.EE.CA.FE.ED` |
| 68 | + |
| 69 | +These defaults are restored when you: |
| 70 | +- power up the device |
| 71 | +- within 5 seconds, |
| 72 | + - hold the button for 3 seconds |
| 73 | +- _(as an indicator that the default config was restored, the LED light will deactivate)_ |
| 74 | +- reboot (power cycle) the device |
| 75 | + |
| 76 | +## 2. APIs |
| 77 | + |
| 78 | +## 2.1 Python API |
| 79 | + |
| 80 | +See [python/](python/) |
| 81 | + |
| 82 | +### 2.1.1 Prerequisites |
| 83 | + |
| 84 | +#### 2.1.1.1 The pipenv way |
| 85 | +The API supports [pipenv](https://pipenv.pypa.io). Install pipenv by running: |
| 86 | + |
| 87 | +```console |
| 88 | +pip install --user pipenv |
| 89 | +``` |
| 90 | + |
| 91 | +To install dependencies, run: |
| 92 | + |
| 93 | +```console |
| 94 | +$ pipenv install |
| 95 | +``` |
| 96 | + |
| 97 | +Then, to run `ssync.py`, which tests all API functions against a device using the [default |
| 98 | +configuration](#11-restoring-the-default-configuration), run the following: |
| 99 | + |
| 100 | +```console |
| 101 | +$ pipenv run python ssync.py |
| 102 | +``` |
| 103 | + |
| 104 | +Please note that instead of prefixing every command with `pipenv run`, you can alternatively also open a pipenv shell: |
| 105 | + |
| 106 | +```console |
| 107 | +$ pipenv shell |
| 108 | +``` |
| 109 | + |
| 110 | +#### 2.1.1.2 Without pipenv |
| 111 | + |
| 112 | +Ensure you are running python 3.8 or above. Then run: |
| 113 | + |
| 114 | +```console |
| 115 | +$ pip install requests |
| 116 | +``` |
| 117 | + |
| 118 | +Then, to run `ssync.py`, which tests all API functions against a device using the [default |
| 119 | +configuration](#11-restoring-the-default-configuration), run the following: |
| 120 | + |
| 121 | +```console |
| 122 | +$ python ssync.py |
| 123 | +``` |
| 124 | + |
| 125 | + |
| 126 | +### 2.1.2 Examples |
| 127 | + |
| 128 | +```python |
| 129 | + # import and init |
| 130 | + import SensorSync from ssync |
| 131 | + s = SensorSync('192.168.2.49') |
| 132 | + |
| 133 | + # or |
| 134 | + # s = SensorSync() |
| 135 | + # s.ip = '192.168.2.49' |
| 136 | + |
| 137 | + |
| 138 | + # set and reset sensors |
| 139 | + # valid sensor numbers: 1..8 |
| 140 | + OK, _ = s.activate(1) |
| 141 | + OK, _ = s.reset(1) |
| 142 | + |
| 143 | + # optionally, check the returned html when activating/resetting: |
| 144 | + OK, _ = s.activate(1, verify=True) |
| 145 | + OK, _ = s.reset(1, verify=True) |
| 146 | + |
| 147 | + # request status |
| 148 | + OK, status_html = s.status() |
| 149 | + |
| 150 | + # status_html looks like this: |
| 151 | + <html> |
| 152 | + Version 2.3 |
| 153 | + IP=192.168.2.49 |
| 154 | + MAC=DE.AD.BE.EF.FE.ED |
| 155 | + SENSORS=0 |
| 156 | + </html> |
| 157 | + |
| 158 | + # re-configure device: |
| 159 | + OK, _ = s.write_ip('192.168.2.49') |
| 160 | + OK, _ = s.write_mac('CA.FE.EE.CA.FE.ED') |
| 161 | + OK, _ = s.reboot() |
| 162 | +``` |
| 163 | + |
| 164 | +## 2.2 Python API (type-checked) |
| 165 | + |
| 166 | +### 2.2.1 Prerequisites |
| 167 | + |
| 168 | +Optionally, a type-checked version of the API exists. It lives in |
| 169 | +[./python/type_checked_python_3.9_and_above](./python/type_checked_python_3.9_and_above/). |
| 170 | + |
| 171 | +**The type-checked API requires python 3.9 or above!** |
| 172 | + |
| 173 | +Its dependencies are: |
| 174 | +- `python3.9` or above |
| 175 | +- `requests` : runtime only |
| 176 | +- `mypy` : type-checker, development time only |
| 177 | +- `types-requests` : development time only |
| 178 | + |
| 179 | +So, if you just want to use the API, you only need to `pip install requests` and you are done. |
| 180 | + |
| 181 | +If you plan to develop and use `mypy` for type-checking, we recommend using [pipenv](https://pipenv.pypa.io). Install |
| 182 | +pipenv by running: |
| 183 | + |
| 184 | +```console |
| 185 | +pip install --user pipenv |
| 186 | +``` |
| 187 | + |
| 188 | +To install dependencies, run: |
| 189 | + |
| 190 | +```console |
| 191 | +$ pipenv install -d |
| 192 | +``` |
| 193 | + |
| 194 | +Then, to run `ssync.py`, which tests all API functions against a device using the [default |
| 195 | +configuration](#11-restoring-the-default-configuration), run the following: |
| 196 | + |
| 197 | +```console |
| 198 | +$ pipenv run python ssync.py |
| 199 | +``` |
| 200 | + |
| 201 | +To perform a type-check, run: |
| 202 | + |
| 203 | +```console |
| 204 | +$ pipenv run mypy . |
| 205 | +``` |
| 206 | + |
| 207 | +Please note that instead of prefixing every command with `pipenv run`, you can alternatively also open a pipenv shell: |
| 208 | + |
| 209 | +```console |
| 210 | +$ pipenv shell |
| 211 | +``` |
| 212 | + |
| 213 | +### 2.2.2 Examples |
| 214 | + |
| 215 | +```python |
| 216 | + # import and init |
| 217 | + import SensorSync from ssync |
| 218 | + s = SensorSync('192.168.2.49') |
| 219 | + |
| 220 | + # or |
| 221 | + # s = SensorSync() |
| 222 | + # s.ip = '192.168.2.49' |
| 223 | + |
| 224 | + |
| 225 | + # set and reset sensors |
| 226 | + # valid sensor numbers: 1..8 |
| 227 | + OK, _ = s.activate(1) |
| 228 | + OK, _ = s.reset(1) |
| 229 | + |
| 230 | + # optionally, check the returned html when activating/resetting: |
| 231 | + OK, _ = s.activate(1, verify=True) |
| 232 | + OK, _ = s.reset(1, verify=True) |
| 233 | + |
| 234 | + # request status |
| 235 | + OK, status_html = s.status() |
| 236 | + |
| 237 | + # status_html looks like this: |
| 238 | + <html> |
| 239 | + Version 2.3 |
| 240 | + IP=192.168.2.49 |
| 241 | + MAC=DE.AD.BE.EF.FE.ED |
| 242 | + SENSORS=0 |
| 243 | + </html> |
| 244 | + |
| 245 | + # re-configure device: |
| 246 | + OK, _ = s.write_ip('192.168.2.49') |
| 247 | + OK, _ = s.write_mac('CA.FE.EE.CA.FE.ED') |
| 248 | + OK, _ = s.reboot() |
| 249 | +``` |
| 250 | + |
| 251 | +## 2.3 Javascript API |
| 252 | + |
| 253 | +See [javascript/](javascript/). A simple demo web page, [ssync-demo.html](javascript/ssync-demo.html), is provided, too. |
| 254 | +You can open it directly in the browser, no web server required. |
| 255 | + |
| 256 | +Should your system insist on a web server, there's always: |
| 257 | + |
| 258 | +```console |
| 259 | +python3 -m http.server . |
| 260 | +``` |
| 261 | + |
| 262 | +### 2.3.1 Examples |
| 263 | + |
| 264 | +```javascript |
| 265 | + // set IP address to use: |
| 266 | + // ------------------------------------------------------------------------ |
| 267 | + set_ssync_ip(ip_address_as_string); |
| 268 | + |
| 269 | + |
| 270 | + // activate a sensor: |
| 271 | + // ------------------------------------------------------------------------ |
| 272 | + activate_sensor(sensor_number); // sensor number range: 1..8 |
| 273 | + |
| 274 | + |
| 275 | + // de-activate a sensor: |
| 276 | + // ------------------------------------------------------------------------ |
| 277 | + reset_sensor(sensor_number); // sensor number range: 1..8 |
| 278 | + |
| 279 | + |
| 280 | + // read config: |
| 281 | + // ------------------------------------------------------------------------ |
| 282 | + read_config() // returns a promise, access with .then(...) |
| 283 | + |
| 284 | + read_config().then(data => console.log(data.ip, data.mac, data.sensors)) |
| 285 | + |
| 286 | + |
| 287 | + |
| 288 | + // return values and error handling |
| 289 | + // ------------------------------------------------------------------------ |
| 290 | + // just activate |
| 291 | + activate_sensor(1); |
| 292 | + |
| 293 | + // activate sensor and log result to console |
| 294 | + activate_sensor(1).then(result_html => console.log(result_html)); |
| 295 | + |
| 296 | + // activate sensor and log result to console, catch and log error |
| 297 | + activate_sensor(1) |
| 298 | + .then(result_html => console.log(result_html)) |
| 299 | + .catch(function (err) { |
| 300 | + console.log('Fetch Error :-S', err); |
| 301 | + }); |
| 302 | + |
| 303 | + // NOTE: if you chain multiple calls and want them to be executed in order, |
| 304 | + // use the `await` keyword. This only works inside of functions: |
| 305 | + |
| 306 | + async function foo() { |
| 307 | + console.log('the following happens in order') |
| 308 | + |
| 309 | + // just activate |
| 310 | + await activate_sensor(1); |
| 311 | + |
| 312 | + // activate sensor and log result to console |
| 313 | + await activate_sensor(1).then(result_html => console.log(result_html)); |
| 314 | + |
| 315 | + // activate sensor and log result to console, catch and log error |
| 316 | + await activate_sensor(1) |
| 317 | + .then(result_html => console.log(result_html)) |
| 318 | + .catch(function (err) { |
| 319 | + console.log('Fetch Error :-S', err); |
| 320 | + }); |
| 321 | + |
| 322 | + await read_config().then(data => console.log('\n', |
| 323 | + 'ip: ' + data.ip, '\n', |
| 324 | + 'mac: ' + data.mac, '\n', |
| 325 | + 'sensor states: ', data.sensors, '\n', |
| 326 | + data) |
| 327 | + ); |
| 328 | + |
| 329 | + console.log('finished'); |
| 330 | + } |
| 331 | + |
| 332 | + // call the function |
| 333 | + foo(); |
| 334 | + |
| 335 | + // see `ssync-demo.html` for an example for how to use this inside of an HTML file. |
| 336 | +``` |
| 337 | + |
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