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paciorekpaciorek
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Merge branch 'devel' of github.com:nimble-dev/nimble into devel
2 parents 531bba8 + 2784e26 commit bc8d972

10 files changed

Lines changed: 325 additions & 413 deletions

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‎packages/nimble/R/cppDefs_nimbleList.R‎

Lines changed: 15 additions & 15 deletions
Original file line numberDiff line numberDiff line change
@@ -59,7 +59,7 @@ cppNimbleListClass <- setRefClass('cppNimbleListClass',
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## ptrToSmartPtrBase = dynamic_cast<nimSmartPtrBase*>(ptrToSmartPtr);
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## ptrToPtr = ptrToSmartPtr->getVoidPtrToRealPtr();
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## reinterpret_cast<nfRefClass_84*>(*static_cast<void**>(ptrToPtr))->NO_hw();
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## PROTECT(SptrToSmartPtrBase = R_MakeExternalPtr(ptrToSmartPtrBase, R_NilValue, R_NilValue));
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## PROTECT(SptrToPtr = R_MakeExternalPtr(ptrToPtr, R_NilValue, R_NilValue));
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## PROTECT(Sans = Rf_allocVector(VECSXP,2));
@@ -83,11 +83,11 @@ cppNimbleListClass <- setRefClass('cppNimbleListClass',
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'PROTECT(SptrToSmartPtrBase = R_MakeExternalPtr(ptrToSmartPtrBase, R_NilValue, R_NilValue));',
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'PROTECT(SptrToPtr = R_MakeExternalPtr(ptrToPtr, R_NilValue, R_NilValue));'))
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allocVectorLine <- cppLiteral(paste0('PROTECT(Sans = Rf_allocVector(VECSXP,', 2, '));'))
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packListLines <- cppLiteral(c('SET_VECTOR_ELT(Sans,0,SptrToSmartPtrBase);',
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'SET_VECTOR_ELT(Sans,1,SptrToPtr);'
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))
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codeLines <- substitute({
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## Finalizer registration now happens through nimble's finalizer mapping system.
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UNPROTECT(3)
@@ -99,7 +99,7 @@ cppNimbleListClass <- setRefClass('cppNimbleListClass',
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args = args,
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code = cppCodeBlock(code = allCode, objectDefs = CBobjectDefs, skipBrackets = TRUE),
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returnType = cppSEXP(),
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externC = TRUE)
102+
externC = TRUE)
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},
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buildSEXPgenerator = function(finalizer = NULL) {
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## Build a function that will provide a new object and return an external pointer.
@@ -197,7 +197,7 @@ cppNimbleListClass <- setRefClass('cppNimbleListClass',
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listElementTable <- symbolTable()
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listElementTable$addSymbol(cppSEXP(name = "S_newNimList"))
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listElementTable$addSymbol(cppSEXP(name = "S_listName"))
200-
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newListLine[[1]] <- substitute({PROTECT(S_listName <- Rf_allocVector(STRSXP, 1));
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SET_STRING_ELT(S_listName, 0, PROTECT(Rf_mkChar(LISTNAME)));},
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list(LISTNAME = nimCompProc$nimbleListObj$className))
@@ -225,28 +225,28 @@ cppNimbleListClass <- setRefClass('cppNimbleListClass',
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listElementTable <- symbolTable()
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numElements <- length(elementNames)
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conditionalLineList <- list()
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conditionalClauseStart <- list(quote(cppLiteral('if (!RCopiedFlag){')))
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conditionalClauseEnd <- list(quote(cppLiteral('}')))
231-
environmentCPPName <- Rname2CppName('S_.xData') ## create SEXP for ref class environment
231+
environmentCPPName <- Rname2CppName('S_.xData') ## create SEXP for ref class environment
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listElementTable$addSymbol(cppSEXP(name = environmentCPPName))
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envLine <- substitute({PROTECT(ENVNAME <- Rf_allocVector(STRSXP, 1));
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SET_STRING_ELT(ENVNAME, 0, PROTECT(Rf_mkChar(".xData")));},
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list(ENVNAME = as.name(environmentCPPName)))
236-
236+
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for(i in seq_along(elementNames)){
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Snames[i] <- Rname2CppName(paste0('S_', elementNames[i]))
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listElementTable$addSymbol(cppSEXP(name = Snames[i]))
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elementSymTab <- nimCompProc$symTab$getSymbolObject(elementNames[i])
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conditionalLineList <- c(conditionalLineList, generateConditionalLines(nimCompProc$symTab$getSymbolObject(elementNames[i]),
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listElementTable$getSymbolObject(Snames[i])))
243-
243+
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copyToListLines[[i]] <- substitute(Rf_defineVar(Rf_install(ELEMENTNAME), VALUE, PROTECT(GET_SLOT(ROBJ, XDATA))),
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list(ELEMENTNAME = elementNames[i], VALUE = as.name(Snames[i]),
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ROBJ = as.name('RObjectPointer'),
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XDATA = as.name(environmentCPPName)))
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}
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setFlagLine <- list(substitute(RCopiedFlag <- true,
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list()))
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returnLine <- list(substitute(return(ROBJ),
@@ -276,7 +276,7 @@ cppNimbleListClass <- setRefClass('cppNimbleListClass',
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listElementTable <- symbolTable()
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storeSexpLine <- list(quote(cppLiteral('R_PreserveObject(RObjectPointer = S_nimList_);')))
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279-
environmentCPPName <- Rname2CppName('S_.xData') ## create SEXP for ref class environment
279+
environmentCPPName <- Rname2CppName('S_.xData') ## create SEXP for ref class environment
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listElementTable$addSymbol(cppSEXP(name = environmentCPPName))
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envLine <- substitute({PROTECT(ENVNAME <- Rf_allocVector(STRSXP, 1));
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SET_STRING_ELT(ENVNAME, 0, PROTECT(Rf_mkChar(".xData")));},
@@ -285,8 +285,8 @@ cppNimbleListClass <- setRefClass('cppNimbleListClass',
285285
for(i in seq_along(argNames)) {
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Snames[i] <- Rname2CppName(paste0('S_', argNames[i]))
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listElementTable$addSymbol(cppSEXP(name = Snames[i]))
288-
copyFromListLines[[i]] <- substitute(PROTECT(SVAR <- Rf_findVarInFrame(PROTECT(GET_SLOT(S_nimList_, XDATA)), Rf_install(ARGNAME))),
289-
list(ARGNAME = argNames[i],
288+
copyFromListLines[[i]] <- substitute(PROTECT(SVAR <- NIM_FINDVARINFRAME(PROTECT(GET_SLOT(S_nimList_, XDATA)), Rf_install(ARGNAME))),
289+
list(ARGNAME = argNames[i],
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SVAR = as.name(Snames[i]),
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XDATA = as.name(environmentCPPName)))
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copyLine <- buildCopyLineFromSEXP(listElementTable$getSymbolObject(Snames[i]),
@@ -295,7 +295,7 @@ cppNimbleListClass <- setRefClass('cppNimbleListClass',
295295
}
296296
numArgs <- length(argNames)
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unprotectLine <- substitute(UNPROTECT(N), list(N = 2 * numArgs + 1 + 1))
298-
allCode <- embedListInRbracket(c(storeSexpLine, envLine,
298+
allCode <- embedListInRbracket(c(storeSexpLine, envLine,
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copyFromListLines, copyLines,
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list(unprotectLine)))
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functionDefs[[paste0(name, "_copyFrom")]] <<- cppFunctionDef(name = "copyFromSEXP",
@@ -311,7 +311,7 @@ cppNimbleListClass <- setRefClass('cppNimbleListClass',
311311
elementNames <- nimCompProc$symTab$getSymbolNames()
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resetNestedFlagLines <- list()
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listElementTable <- symbolTable()
314-
314+
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resetFlagLine <- list(substitute(RCopiedFlag <- false,
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list()))
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