Merge pull request #292 from nmfs-opensci/eeholmes-euo-fail

Add set -euo pipefail for error handling

Author: eeholmes

scripts/install-apt-packages.sh

@@ -1,5 +1,6 @@
 #!/bin/bash
 # Required User: root
+set -euo pipefail
 
 echo "Running install-apt-packages.sh"
 

scripts/install-conda-packages.sh

@@ -1,5 +1,6 @@
 #!/bin/bash
 # Required User: NB_USER
+set -euo pipefail
 
 # Set INSTALLATION_HAPPENED to false by default
 INSTALLATION_HAPPENED=false

scripts/install-desktop.sh

@@ -1,6 +1,7 @@
 #!/bin/bash
 # Required User: root
 # Usage: RUN /pyrocket_scripts/install-desktop.sh <directory path>"
+set -euo pipefail
 
 echo "Running install-desktop.sh"
 

scripts/install-geospatial-r.sh

@@ -1,5 +1,5 @@
 #!/bin/bash
-set -e
+set -euo pipefail
 
 # Ensure script is being run as root
 if [ "$(id -u)" -ne 0 ]; then

scripts/install-pip-packages.sh

@@ -1,5 +1,6 @@
 #!/bin/bash
 # Required User: NB_USER
+set -euo pipefail
 
 # Check if a filename argument is provided
 if [ -z "$1" ]; then

scripts/install-r-packages.sh

@@ -1,5 +1,6 @@
 #!/bin/bash
 # Required User: NB_USER
+set -euo pipefail
 
 # Check if a filename argument is provided
 if [ -z "$1" ]; then

scripts/install-rocker.sh

@@ -1,5 +1,5 @@
 #!/bin/bash
-set -e
+set -euo pipefail
 
 echo "Running install-rocker.sh"
 

scripts/install-vscode-extensions.sh

@@ -1,5 +1,6 @@
 #!/bin/bash
 set -euo pipefail
+
 IFS=$'\n\t'
 # Required User: root
 

scripts/setup-texlive.sh

@@ -1,5 +1,5 @@
 #!/bin/bash
-set -e
+set -euo pipefail
 
 echo "Running setup-texlive.sh"