-
Notifications
You must be signed in to change notification settings - Fork 0
Expand file tree
/
Copy pathTODO
More file actions
17 lines (16 loc) · 745 Bytes
/
TODO
File metadata and controls
17 lines (16 loc) · 745 Bytes
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
# short term
1. Finish PopulationTree reference class, add plotting functions, tests
2. Bootstrap precision matrix
3. Refactor main fitting function
# longer term
1. Streamlined rate calculation without using edge diffs
2. Add active parameter detection: mask parameters where
- demographic parameters are Inf (coalescence) or 0 (migration rates)
- admixture coefficient vectors are unitary
- be sure that penalty calculation works here -- may need to set parts of gradient to 0 by hand
3. Prior on population size at time 0
4. Godambe information matrix?
5. Hessian --> Laplace approximation
6. Easier cross validation
- automate splitting into test/train in rate calculation
- automate refitting model across grid of penalty values