Fix blacklist BED file parsing in cooler balance CLI (Fixes #196)#462

Open

ShigrafS wants to merge 14 commits into

open2c:masterfrom

Commits on Feb 26, 2025

Improve chromsizes file validation to catch formatting errors early (#209)
ShigrafS
committed

Commits on Mar 1, 2025

Added a test function for the chromsize check introduced in src/cooler/util.py
ShigrafS
committed
Fixed pytest error in test_chromsize_check.py and made minor tweaks to rea-chromsize in util.py
ShigrafS
committed
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot]
committed

Commits on Mar 5, 2025

Removed verbose and added pandas built in on_bad_lines in def chromsizes.
ShigrafS
committed

Commits on Mar 16, 2025

Fix blacklist BED file parsing in balance.py (#196)
ShigrafS
committed