bids2openminds/.github/workflows/test.yml at main · openMetadataInitiative/bids2openminds · GitHub

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name: bid2openminds_test_pipeline

on:
  push:
      branches:
        - main
  pull_request:
      branches:
        - main

jobs:
  test:
    runs-on: ${{ matrix.os }}
    strategy:
      matrix:
          os: [ubuntu-latest, windows-latest, macos-latest]
    steps:

    - name: Checkout Repository
      uses: actions/checkout@v4

    - name: Checkout BIDS examples
      uses: actions/checkout@v4
      with:
        repository: bids-standard/bids-examples
        path: bids-examples
      #Ties down to the current version of bids-examples as of 2024-09-16. If updated, please update the tests accordingly.
        ref: 7c18d6840982518a0251cfeb59fe5c4610099ea1

    - name: Set up Python 3.11
      uses: actions/setup-python@v5
      with:
        python-version: 3.11

    - name: Install package with test dependencies
      run: |
        pip install -e .[test]

    - name: Minimal test of command-line
      run: |
        bids2openminds --help

    - name: Test installed package
      run: |
        pytest -v --cov=bids2openminds --cov-report=lcov

    - name: Upload coverage to Coveralls
      if: matrix.os == 'ubuntu-latest'
      uses: coverallsapp/github-action@v2
      with:
        github-token: ${{ secrets.GITHUB_TOKEN }}
        path-to-lcov: coverage.lcov

  docs:
    runs-on: ubuntu-latest
    steps:

    - name: Checkout Repository
      uses: actions/checkout@v4

    - name: Set up Python 3.11
      uses: actions/setup-python@v5
      with:
        python-version: 3.11

    - name: Install Sphinx dependencies
      run: |
        pip install sphinx sphinx-rtd-theme

    - name: Build documentation
      run: |
        sphinx-build -W docs/source docs/_build/html