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Expand file tree Collapse file tree Original file line number Diff line number Diff line change 1+ Peyman Najafi
2+ Andrew P. Davison
3+ Lyuba Zehl
4+ Sophia Pieschnik
Original file line number Diff line number Diff line change 11# bids2openminds
22A tool to generate openMINDS metadata from BIDS datasets
33
4- In active development, not yet released. More information coming soon!
4+ In active development, please try the first alpha release and send us feedback by creating an issue.
5+
6+ ## Installation
7+
8+ ```
9+ pip install bids2openminds
10+ ```
11+
12+ ## Usage
13+
14+ ```
15+ Usage: bids2openminds [OPTIONS] INPUT_PATH
16+
17+ Options:
18+ -o, --output-path PATH The output path or filename for OpenMINDS
19+ file/files.
20+ --single-file Save the entire collection into a single
21+ file (default).
22+ --multiple-files Each node is saved into a separate file
23+ within the specified directory. 'output-
24+ path' if specified, must be a directory.
25+ -e, --include-empty-properties Whether to include empty properties in the
26+ final file.
27+ -q, --quiet Not generate the final report and no
28+ warning.
29+ --help Show this message and exit.
30+ ```
531
632## For developers
733
834To run tests:
9-
35+ ```
1036 $ pytest
37+ ```
Original file line number Diff line number Diff line change 11[project ]
22name = " bids2openminds"
3- version = " 0.0 .0"
3+ version = " 0.1 .0"
44dependencies = [
55 " bids" ,
6- " openminds >= 0.2.2 " ,
6+ " openminds >= 0.2.3 " ,
77 " click>=8.1" ,
88 " pandas" ,
99 " nameparser >= 1.1.3"
@@ -12,6 +12,7 @@ requires-python = ">=3.9"
1212authors = [
1313 {name = " Peyman Najafi" , email = " peyman.najafi@cnrs.fr" },
1414 {name = " Andrew P. Davison" , email = " andrew.davison@cnrs.fr" },
15+ {name = " Lyuba Zehl" , email = " lyuba.zehl@ebrains.eu" }
1516]
1617description = " Generates openMINDS metadata from a BIDS dataset"
1718readme = " README.md"
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