Merge pull request #85 from Peyman-N/improve-reporing

Reporting list of protocols and tasks detected

Author: Raphael-Gazzotti

bids2openminds/main.py

@@ -95,6 +95,7 @@ def create_behavioral_protocol(layout, collection):
 
 
 def techniques_openminds(suffix):
+    # TODO "MRIPulseSequence" and "MRIWeighting" should be added as soon as openMINDS v4 becomes available.
     possible_types = ["Technique", "AnalysisTechnique", "StimulationApproach",
                       "StimulationTechnique"]
 

bids2openminds/report.py

@@ -39,6 +39,20 @@ def create_report(dataset, dataset_version, collection, dataset_description, inp
         else:
             data_types_list = f"{dataset_version.data_types.name}\n"
 
+    techniques_list = ""
+    if dataset_version.techniques is not None:
+        for technique in dataset_version.techniques:
+            techniques_list += f"{technique.name}\n"
+    else:
+        techniques_list = "No techniques were detected. Please follow the BIDS recommendations for suffixes, as bids2openminds detects techniques based on suffixes."
+
+    behavioral_protocols_list = ""
+    if dataset_version.behavioral_protocols is not None:
+        for behavioral_protocol in dataset_version.behavioral_protocols:
+            behavioral_protocols_list += f"{behavioral_protocol.name}\n"
+    else:
+        behavioral_protocols_list = "No behavioral protocols were detected. Please follow the BIDS recommendations for task labels, as bids2openminds detects behavioral protocols based on task labels."
+
     author_list = ""
     i = 1
     if dataset_version.authors is not None:
@@ -65,14 +79,6 @@ def create_report(dataset, dataset_version, collection, dataset_description, inp
 Dataset title : {dataset.full_name}
 
 
-Experimental approaches detected:
------------------------------------------- 
-{experimental_approaches_list}
-
-Detected data types:
-------------------------------------------
-{data_types_list}
-
 The following elements were converted:  
 ------------------------------------------   
 + number of authors : {len(dataset_version.authors or [])}
@@ -84,6 +90,23 @@ def create_report(dataset, dataset_version, collection, dataset_description, inp
 + number of behavioral protocols: {behavioral_protocols_numbers}
 
 
+Experimental approaches detected:
+------------------------------------------ 
+{experimental_approaches_list}
+
+Detected data types:
+------------------------------------------
+{data_types_list}
+
+Detected techniques:
+------------------------------------------
+{techniques_list}
+
+Detected behavioral protocols:
+------------------------------------------
+{behavioral_protocols_list}
+
+
 
 **Important Notes**
 ------------------------------------------