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e28efef
Update DKA.jsonld
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Create DKA_v2006.jsonld
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Delete instances/latest/parcellationEntities/DKA/DKA_banksSuperiorTem…
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second update of definition
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second update of definition
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BAV-type update
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Update and rename DKA_temporalLobe_medialAspect.jsonld to DKA_medialT…
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Update DKA.jsonld
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Update DKA_v2006.jsonld
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Add missing definition
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158 changes: 158 additions & 0 deletions
158
instances/latest/brainAtlasVersions/DKA/DKA_v2006.jsonld
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,158 @@ | ||
| { | ||
| "@context": { | ||
| "@vocab": "https://openminds.om-i.org/props/" | ||
| }, | ||
| "@id": "https://openminds.om-i.org/instances/brainAtlasVersion/DKA_v2006", | ||
| "@type": "https://openminds.om-i.org/types/BrainAtlasVersion", | ||
| "abbreviation": "DKA", | ||
| "accessibility": { | ||
| "@id": "https://openminds.om-i.org/instances/productAccessibility/freeAccess" | ||
| }, | ||
| "author": null, | ||
| "coordinateSpace": null, | ||
| "copyright": null, | ||
| "custodian": null, | ||
| "description": "An automated labeling system for subdividing the human cerebral cortex on MRI scans into gyral based regions of interest. [title of [Desikan et al. (2006)](https://doi.org/10.1016/j.neuroimage.2006.01.021)]", | ||
| "digitalIdentifier": null, | ||
| "fullDocumentation": { | ||
| "@id": "https://doi.org/10.1016/j.neuroimage.2006.01.021" | ||
| }, | ||
| "fullName": "Desikan-Killiany Cortical Atlas", | ||
| "funding": null, | ||
| "hasTerminology": { | ||
| "@type": "https://openminds.om-i.org/types/ParcellationTerminologyVersion", | ||
| "dataLocation": null, | ||
| "hasEntity": [ | ||
| { | ||
| "@id": "https://openminds.om-i.org/instances/parcellationEntityVersion/DKA_v2006_banksOfSuperiorTemporalSulcus" | ||
| }, | ||
| { | ||
| "@id": "https://openminds.om-i.org/instances/parcellationEntityVersion/DKA_v2006_caudalAnteriorCingulateCortex" | ||
| }, | ||
| { | ||
| "@id": "https://openminds.om-i.org/instances/parcellationEntityVersion/DKA_v2006_caudalMiddleFrontalGyrus" | ||
| }, | ||
| { | ||
| "@id": "https://openminds.om-i.org/instances/parcellationEntityVersion/DKA_v2006_corpusCallosum" | ||
| }, | ||
| { | ||
| "@id": "https://openminds.om-i.org/instances/parcellationEntityVersion/DKA_v2006_cuneusCortex" | ||
| }, | ||
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| "@id": "https://openminds.om-i.org/instances/parcellationEntityVersion/DKA_v2006_entorhinalCortex" | ||
| }, | ||
| { | ||
| "@id": "https://openminds.om-i.org/instances/parcellationEntityVersion/DKA_v2006_frontalPole" | ||
| }, | ||
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| "@id": "https://openminds.om-i.org/instances/parcellationEntityVersion/DKA_v2006_fusiformGyrus" | ||
| }, | ||
| { | ||
| "@id": "https://openminds.om-i.org/instances/parcellationEntityVersion/DKA_v2006_inferiorParietalCortex" | ||
| }, | ||
| { | ||
| "@id": "https://openminds.om-i.org/instances/parcellationEntityVersion/DKA_v2006_inferiorTemporalGyrus" | ||
| }, | ||
| { | ||
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| }, | ||
| { | ||
| "@id": "https://openminds.om-i.org/instances/parcellationEntityVersion/DKA_v2006_isthmusOfCingulateCortex" | ||
| }, | ||
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| "@id": "https://openminds.om-i.org/instances/parcellationEntityVersion/DKA_v2006_lateralOccipitalCortex" | ||
| }, | ||
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| "@id": "https://openminds.om-i.org/instances/parcellationEntityVersion/DKA_v2006_lateralOrbitalFrontalCortex" | ||
| }, | ||
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| "@id": "https://openminds.om-i.org/instances/parcellationEntityVersion/DKA_v2006_lingualGyrus" | ||
| }, | ||
| { | ||
| "@id": "https://openminds.om-i.org/instances/parcellationEntityVersion/DKA_v2006_medialOrbitalFrontalCortex" | ||
| }, | ||
| { | ||
| "@id": "https://openminds.om-i.org/instances/parcellationEntityVersion/DKA_v2006_middleTemporalGyrus" | ||
| }, | ||
| { | ||
| "@id": "https://openminds.om-i.org/instances/parcellationEntityVersion/DKA_v2006_paracentralLobule" | ||
| }, | ||
| { | ||
| "@id": "https://openminds.om-i.org/instances/parcellationEntityVersion/DKA_v2006_parahippocampalGyrus" | ||
| }, | ||
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| "@id": "https://openminds.om-i.org/instances/parcellationEntityVersion/DKA_v2006_parsOpercularis" | ||
| }, | ||
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| "@id": "https://openminds.om-i.org/instances/parcellationEntityVersion/DKA_v2006_parsOrbitalis" | ||
| }, | ||
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| "@id": "https://openminds.om-i.org/instances/parcellationEntityVersion/DKA_v2006_parsTriangularis" | ||
| }, | ||
| { | ||
| "@id": "https://openminds.om-i.org/instances/parcellationEntityVersion/DKA_v2006_pericalcarineCortex" | ||
| }, | ||
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| "@id": "https://openminds.om-i.org/instances/parcellationEntityVersion/DKA_v2006_postcentralGyrus" | ||
| }, | ||
| { | ||
| "@id": "https://openminds.om-i.org/instances/parcellationEntityVersion/DKA_v2006_posteriorCingulateCortex" | ||
| }, | ||
| { | ||
| "@id": "https://openminds.om-i.org/instances/parcellationEntityVersion/DKA_v2006_precentralGyrus" | ||
| }, | ||
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| "@id": "https://openminds.om-i.org/instances/parcellationEntityVersion/DKA_v2006_precuneusCortex" | ||
| }, | ||
| { | ||
| "@id": "https://openminds.om-i.org/instances/parcellationEntityVersion/DKA_v2006_rostralAnteriorCingulateCortex" | ||
| }, | ||
| { | ||
| "@id": "https://openminds.om-i.org/instances/parcellationEntityVersion/DKA_v2006_rostralMiddleFrontalGyrus" | ||
| }, | ||
| { | ||
| "@id": "https://openminds.om-i.org/instances/parcellationEntityVersion/DKA_v2006_superiorFrontalGyrus" | ||
| }, | ||
| { | ||
| "@id": "https://openminds.om-i.org/instances/parcellationEntityVersion/DKA_v2006_superiorParietalCortex" | ||
| }, | ||
| { | ||
| "@id": "https://openminds.om-i.org/instances/parcellationEntityVersion/DKA_v2006_superiorTemporalGyrus" | ||
| }, | ||
| { | ||
| "@id": "https://openminds.om-i.org/instances/parcellationEntityVersion/DKA_v2006_supramarginalGyrus" | ||
| }, | ||
| { | ||
| "@id": "https://openminds.om-i.org/instances/parcellationEntityVersion/DKA_v2006_temporalPole" | ||
| }, | ||
| { | ||
| "@id": "https://openminds.om-i.org/instances/parcellationEntityVersion/DKA_v2006_transverseTemporalCortex" | ||
| } | ||
| ], | ||
| "ontologyIdentifier": null | ||
| }, | ||
| "homepage": null, | ||
| "howToCite": "Desikan RS, Ségonne F, Fischl B, Quinn BT, Dickerson BC, Blacker D, Buckner RL, Dale AM, Maguire RP, Hyman BT, Albert MS and Killiany RJ (2006) An automated labeling system for subdividing the human cerebral cortex on MRI scans into gyral based regions of interest, NeuroImage, 31:3, 968-980, doi: https://doi.org/10.1016/j.neuroimage.2006.01.021.", | ||
| "isAlternativeVersionOf": null, | ||
| "isNewVersionOf": null, | ||
| "keyword": null, | ||
| "license": null, | ||
| "majorVersionIdentifier": null, | ||
| "ontologyIdentifier": null, | ||
| "otherContribution": null, | ||
| "relatedPublication": [ | ||
| { | ||
| "@id": "https://doi.org/10.1016/j.neuroimage.2006.01.021" | ||
| } | ||
| ], | ||
| "releaseDate": "2006-03-10", | ||
| "repository": null, | ||
| "shortName": "Desikan-Killiany Atlas", | ||
| "supportChannel": null, | ||
| "type": { | ||
| "@id": "https://openminds.om-i.org/instances/atlasType/parcellationModel" | ||
| }, | ||
| "usedSpecimen": null, | ||
| "versionIdentifier": "v2006", | ||
| "versionInnovation": "This is the first version of this parcellation model and subdivides the cerebral cortex into 34 gyral based regions of interest. This automated delineation algorithm was trained on manual delineations of both hemispheres of MRI scans from 40 subjects using a 'sulcal' approach (manual tracing from the depth of one sulcus to another, thus incorporating the gyrus within). The drawn ROIs were then used to generate the cortical parcellation model using a registration procedure that aligns the cortical folding patterns [Fischl et al. (1999)](https://doi.org/10.1002/(SICI)1097-0193(1999)8:4%3C272::AID-HBM10%3E3.0.CO;2-4) and probabilistically assigns a neuroanatomical region to every point on the cortical surface [Fischl et al. (2004)](https://doi.org/10.1093/cercor/bhg087)." | ||
| } | ||
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16 changes: 0 additions & 16 deletions
16
instances/latest/parcellationEntities/DKA/DKA_banksSuperiorTemporalSulcus.jsonld
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should be GNU General Public License (GPL) (because it is only distributed under FreeSurfer)
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Not sure if this is correct. Based on the release notes for stable v5.1.0, they have a new license: https://surfer.nmr.mgh.harvard.edu/fswiki/FreeSurferSoftwareLicense (according to the release notes a 'BSD-like' license).
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we may want to get in touch with the developers to clarify this one