Updated version of MRIAcquisition for v5

schemas/activity/MRIAcquisition.schema.tpl.json

@@ -1,33 +1,82 @@
 {
   "_extends": "/core/schemas/research/experimentalActivity.schema.tpl.json",
+  "required": [
+    "device",
+    "input",
+    "output",
+    "specimenOrientation"
+  ],
   "properties": {
     "contrastAgent": {
-      "_instruction": "Add the contrast agent used for this scan.",
+      "_instruction": "Add the contrast agent(s) administered for this acquisition, including for each the agent identity and administered amount; if no contrast agent was used, leave this field null. Include all agents given prior to or during the scan.",
       "_linkedTypes": [
         "chemicals:AmountOfChemical"
-      ]
+      ],
+      "minItems": 1,
+      "type": "array",
+      "uniqueItems": true
     },
     "device": {
-      "_instruction": "Add the MRI machine setting used for this scan.",
+      "_instruction": "Add the magnetic resonance imaging (MRI) scanner used for this acquisition. This reference should identify the specific device configuration under which the scan was performed.",
       "_linkedTypes": [
         "neuroimaging:MRIScannerUsage"
       ]
     },
+    "distortionCorrection": {
+      "_instruction": "Add the distortion correction data used for this acquisition, linking to the calibration files applied during image reconstruction or post-processing. If no distortion correction was performed, leave this field null.",
+      "_linkedTypes": [
+        "core:File"
+      ],
+      "minItems": 1,
+      "type": "array",
+      "uniqueItems": true
+    },
     "input": {
-      "_instruction": "Add the state of the subject or tissue sample before this session.",
+      "_instruction": "Add the specimen (subject or tissue sample) in the physical and biological state in which it was scanned, referencing the corresponding specimen record at the time of imaging.",
       "_linkedTypes": [
         "core:SubjectState",
         "core:TissueSampleState"
       ]
     },
+    "motionCorrection": {
+      "_instruction": "Add the motion correction data used for this acquisition, linking to the calibration files or reference images applied during image reconstruction or post-processing. If no motion correction was performed, leave this field null.",
+      "_linkedTypes": [
+        "core:File"
+      ],
+      "minItems": 1,
+      "type": "array",
+      "uniqueItems": true
+    },
+    "output":{
+      "_instruction": "Add the output data generated by this acquisition by linking to one or more files containing the primary imaging outputs and/or, if applicable, any secondary reconstructed or corrected outputs produced during post-processing.",
+      "_linkedTypes": [
+        "core:File"
+      ],
+      "minItems": 1,
+      "type": "array",
+      "uniqueItems": true
+    },
+    "registrationData": {
+      "_instruction": "Add the registration data used for this acquisition, linking to the transformation and/or reference files applied during image alignment in post-processing. If no registration was performed, leave this field null.",
+      "_linkedTypes": [
+        "core:File"
+      ],
+      "minItems": 1,
+      "type": "array",
+      "uniqueItems": true
+
+    },
     "specimenOrientation": {
-      "_instruction": "Add the anatomical orientation of the specimen in the scanner.",
+      "_instruction": "Add the specimen orientation as the anatomical directions corresponding to the scanner X, Y, and Z axes, describing the alignment of the specimen's anatomy with the scanner coordinate system. Note that this orientation may differ from the prescribed slice orientation, especially in nonstandard specimen positioning.",
       "_linkedTypes": [
         "controlledTerms:AnatomicalAxesOrientation"
       ]
+    },
+    "targetAnatomy": {
+      "_instruction": "Add the target anatomy, indicating the primary anatomical structure or region intended to be imaged in this acquisition. This field describes the imaging objective (for example, organ, tissue, or structure) and may be derived from the acquisition protocol description.",
+      "_linkedCategories": [
+        "anatomicalLocation"
+      ]
     }
-  },
-  "required": [
-    "device"
-  ]
+  }
 }