Backport CI fixes to release 0.16.2 (#1726)

* RTD: Sphinx Key (#1715)

https://about.readthedocs.com/blog/2024/12/deprecate-config-files-without-sphinx-or-mkdocs-config/

* Pre-commit

* Fix source/documentation CI run (#1719)

* Empty commit to verify that the CI run is broken

* uhh try changing to another conda setup action?

* Cleanup

---------

Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>

Author: franzpoeschel

.github/workflows/source.yml

@@ -36,14 +36,18 @@ jobs:
     runs-on: ubuntu-22.04
     steps:
     - uses: actions/checkout@v4
-    - uses: s-weigand/setup-conda@v1.2.2
+    - uses: conda-incubator/setup-miniconda@v3
+      name: Setup conda
       with:
-        update-conda: true
-        conda-channels: conda-forge
+        auto-update-conda: true
+        channels: conda-forge,defaults
+        channel-priority: true
     - name: Install
       run: conda install -c conda-forge doxygen=1.9.6
     - name: Doxygen
-      run: .github/workflows/source/buildDoxygen
+      run: |
+        source /usr/share/miniconda/bin/activate
+        .github/workflows/source/buildDoxygen
 
   urls:
     runs-on: ubuntu-latest

.pre-commit-config.yaml

@@ -66,7 +66,7 @@ repos:
 # clang-format v13
 #   to run manually, use .github/workflows/clang-format/clang-format.sh
 - repo: https://github.com/pre-commit/mirrors-clang-format
-  rev: v19.1.1
+  rev: v19.1.7
   hooks:
   - id: clang-format
     # By default, the clang-format hook configures:
@@ -80,15 +80,15 @@ repos:
 
 # Autoremoves unused Python imports
 - repo: https://github.com/hadialqattan/pycln
-  rev: v2.4.0
+  rev: v2.5.0
   hooks:
   - id: pycln
     name: pycln (python)
 
 # Sorts Python imports according to PEP8
 # https://www.python.org/dev/peps/pep-0008/#imports
 - repo: https://github.com/pycqa/isort
-  rev: 5.13.2
+  rev: 6.0.0
   hooks:
   - id: isort
     name: isort (python)
@@ -128,7 +128,7 @@ repos:
 
 # Checks the manifest for missing files (native support)
 - repo: https://github.com/mgedmin/check-manifest
-  rev: "0.49"
+  rev: "0.50"
   hooks:
   - id: check-manifest
     # This is a slow hook, so only run this if --hook-stage manual is passed

.readthedocs.yml

@@ -4,6 +4,9 @@ python:
   install:
     - requirements: docs/requirements.txt
 
+sphinx:
+  configuration: docs/source/conf.py
+
 formats:
   - htmlzip
   - pdf