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CI: Move Ubuntu 20.04 workflows to 22.04 (#1731)
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-199
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21 files changed

+176
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‎.clang-tidy‎

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@@ -2,5 +2,5 @@
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# FIXME: all performance-* reports
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# FIXME: all cert-* reports
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# FIXME: all bugprone-* reports
5-
Checks: -*,bugprone-*,-bugprone-unhandled-self-assignment,-bugprone-parent-virtual-call,-bugprone-narrowing-conversions,-bugprone-exception-escape,-bugprone-string-literal-with-embedded-nul,cppcoreguidelines-slicing,mpi-*,readability-non-const-parameter,performance-*,modernize-*,-modernize-use-trailing-return-type,-modernize-use-bool-literals,-modernize-avoid-c-arrays,-modernize-use-auto,-modernize-return-braced-init-list
5+
Checks: -*,bugprone-*,-bugprone-unhandled-self-assignment,-bugprone-parent-virtual-call,-bugprone-narrowing-conversions,-bugprone-exception-escape,-bugprone-string-literal-with-embedded-nul,cppcoreguidelines-slicing,mpi-*,readability-non-const-parameter,performance-*,modernize-*,-modernize-use-trailing-return-type,-modernize-use-bool-literals,-modernize-avoid-c-arrays,-modernize-use-auto,-modernize-return-braced-init-list,-bugprone-easily-swappable-parameters
66
HeaderFilterRegex: '((^(?!\/share\/openPMD\/).*)*include\/openPMD\/.+\.hpp|src\/^(?!binding).+\.cpp$)'

.github/ci/spack-envs/clang7_nopy_nompi_h5_libcpp/spack.yaml renamed to .github/ci/spack-envs/clang11_nopy_nompi_h5_libcpp/spack.yaml

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@@ -12,7 +12,7 @@ spack:
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all:
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target: [x86_64]
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variants: ~mpi ~fortran
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compiler: [clang@7.0.1]
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compiler: [clang@11.1.0]
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compilers:
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- compiler:
@@ -22,13 +22,13 @@ spack:
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cxxflags: -stdlib=libc++
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ldflags: -stdlib=libc++
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modules: []
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operating_system: ubuntu20.04
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operating_system: ubuntu22.04
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paths:
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cc: /usr/bin/clang-7
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cxx: /usr/bin/clang++-7
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cc: /usr/bin/clang-11
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cxx: /usr/bin/clang++-11
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f77: null
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fc: null
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spec: clang@7.0.1
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spec: clang@11.1.0
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target: x86_64
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config:

.github/ci/spack-envs/clang7_nopy_ompi_h5_ad2/spack.yaml renamed to .github/ci/spack-envs/clang11_nopy_ompi_h5_ad2/spack.yaml

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@@ -12,47 +12,47 @@ spack:
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packages:
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adios2:
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variants: ~zfp ~sz ~png ~dataman ~python ~fortran ~ssc ~shared ~bzip2
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variants: ~zfp ~sz ~png ~dataman ~python ~fortran ~ssc ~shared ~bzip2 ~blosc2 ~mgard
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cmake:
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externals:
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- spec: cmake@3.23.0
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- spec: cmake@3.31.5
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prefix: /usr
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buildable: False
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openmpi:
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externals:
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- spec: openmpi@2.1.1
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- spec: openmpi@4.1.2
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prefix: /usr
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buildable: False
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perl:
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externals:
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- spec: perl@5.26.1
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- spec: perl@5.34.0
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prefix: /usr
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buildable: False
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python:
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externals:
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- spec: python@3.8.0
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- spec: python@3.10.12
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prefix: /usr
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buildable: False
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all:
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target: [x86_64]
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variants: ~fortran
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providers:
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mpi: [openmpi]
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compiler: [clang@7.0.0]
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compiler: [clang@11.1.0]
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compilers:
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- compiler:
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environment: {}
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extra_rpaths: []
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flags: {}
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modules: []
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operating_system: ubuntu20.04
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operating_system: ubuntu22.04
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paths:
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cc: /usr/lib/llvm-7/bin/clang
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cxx: /usr/lib/llvm-7/bin/clang++
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cc: /usr/bin/clang-11
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cxx: /usr/bin/clang++-11
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f77: /usr/bin/gfortran
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fc: /usr/bin/gfortran
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spec: clang@7.0.0
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spec: clang@11.1.0
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target: x86_64
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config:

.github/ci/spack-envs/clang7_nopy_ompi_h5_ad2_libcpp/spack.yaml renamed to .github/ci/spack-envs/clang11_nopy_ompi_h5_ad2_libcpp/spack.yaml

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Original file line numberDiff line numberDiff line change
@@ -15,30 +15,30 @@ spack:
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variants: ~zfp ~sz ~png ~dataman ~python ~fortran ~ssc ~shared ~bzip2
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cmake:
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externals:
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- spec: cmake@3.23.0
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- spec: cmake@3.31.5
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prefix: /usr
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buildable: False
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openmpi:
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externals:
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- spec: openmpi@2.1.1
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- spec: openmpi@4.1.2
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prefix: /usr
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buildable: False
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perl:
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externals:
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- spec: perl@5.26.1
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- spec: perl@5.34.0
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prefix: /usr
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buildable: False
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python:
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externals:
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- spec: python@3.8.0
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- spec: python@3.10.12
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prefix: /usr
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buildable: False
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all:
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target: [x86_64]
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variants: ~fortran
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providers:
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mpi: [openmpi]
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compiler: [clang@7.0.1]
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compiler: [clang@11.1.0]
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compilers:
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- compiler:
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cxxflags: -stdlib=libc++
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ldflags: -stdlib=libc++
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modules: []
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operating_system: ubuntu20.04
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operating_system: ubuntu22.04
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paths:
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cc: /usr/bin/clang-7
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cxx: /usr/bin/clang++-7
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cc: /usr/bin/clang-11
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cxx: /usr/bin/clang++-11
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f77: /usr/bin/gfortran
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fc: /usr/bin/gfortran
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spec: clang@7.0.1
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spec: clang@11.1.0
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target: x86_64
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config:

.github/ci/spack-envs/clang14_py311_nompi_h5_ad2/spack.yaml renamed to .github/ci/spack-envs/clang15_py311_nompi_h5_ad2/spack.yaml

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@@ -34,7 +34,7 @@ spack:
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variants: ~fortran
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providers:
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mpi: [openmpi]
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compiler: [clang@14.0.0]
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compiler: [clang@15.0.7]
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compilers:
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- compiler:
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modules: []
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operating_system: ubuntu22.04
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paths:
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cc: /usr/lib/llvm-14/bin/clang
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cxx: /usr/lib/llvm-14/bin/clang++
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cc: /usr/bin/clang-15
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cxx: /usr/bin/clang++-15
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f77: /usr/bin/gfortran
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fc: /usr/bin/gfortran
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spec: clang@14.0.0
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spec: clang@15.0.7
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target: x86_64
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config:

‎.github/ci/spack-envs/clangtidy_nopy_ompi_h5_ad2/spack.yaml‎

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@@ -12,47 +12,47 @@ spack:
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packages:
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adios2:
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variants: ~zfp ~sz ~png ~dataman ~python ~fortran ~ssc ~shared ~bzip2
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variants: ~zfp ~sz ~png ~dataman ~python ~fortran ~ssc ~shared ~bzip2 ~mgard
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cmake:
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externals:
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- spec: cmake@3.23.0
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- spec: cmake@3.31.5
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prefix: /usr
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buildable: False
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openmpi:
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externals:
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- spec: openmpi@2.1.1
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- spec: openmpi@4.1.2
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prefix: /usr
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buildable: False
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perl:
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externals:
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- spec: perl@5.26.1
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- spec: perl@5.34.0
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prefix: /usr
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buildable: False
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python:
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externals:
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- spec: python@3.8.0
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- spec: python@3.10.12
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prefix: /usr
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buildable: False
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all:
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target: [x86_64]
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variants: ~fortran
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providers:
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mpi: [openmpi]
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compiler: [clang@10.0.0]
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compiler: [clang@14.0.0]
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compilers:
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- compiler:
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environment: {}
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extra_rpaths: []
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flags: {}
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modules: []
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operating_system: ubuntu20.04
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operating_system: ubuntu22.04
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paths:
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cc: /usr/lib/llvm-10/bin/clang
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cxx: /usr/lib/llvm-10/bin/clang++
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cc: /usr/bin/clang-14
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cxx: /usr/bin/clang++-14
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f77: /usr/bin/gfortran
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fc: /usr/bin/gfortran
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spec: clang@10.0.0
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spec: clang@14.0.0
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target: x86_64
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config:

.github/ci/spack-envs/gcc7_py36_ompi_h5_ad2/spack.yaml renamed to .github/ci/spack-envs/gcc12_py36_ompi_h5_ad2/spack.yaml

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@@ -15,42 +15,42 @@ spack:
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variants: ~zfp ~sz ~png ~dataman ~python ~fortran ~ssc ~shared ~bzip2
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cmake:
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externals:
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- spec: cmake@3.23.0
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- spec: cmake@3.31.5
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prefix: /usr
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buildable: False
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openmpi:
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externals:
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- spec: openmpi@2.1.1
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- spec: openmpi@4.1.2
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prefix: /usr
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buildable: False
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perl:
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externals:
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- spec: perl@5.26.1
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- spec: perl@5.34.0
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prefix: /usr
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buildable: False
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python:
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externals:
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- spec: python@3.6.3
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- spec: python@3.10.12
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prefix: /usr
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buildable: False
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all:
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target: [x86_64]
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variants: ~fortran
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compiler: [gcc@7.0.0]
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compiler: [gcc@12.3.0]
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compilers:
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- compiler:
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environment: {}
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extra_rpaths: []
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flags: {}
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modules: []
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operating_system: ubuntu20.04
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operating_system: ubuntu22.04
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paths:
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cc: /usr/bin/gcc-7
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cxx: /usr/bin/g++-7
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cc: /usr/bin/gcc-12
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cxx: /usr/bin/g++-12
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f77: /usr/bin/gfortran
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fc: /usr/bin/gfortran
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spec: gcc@7.0.0
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spec: gcc@12.3.0
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target: x86_64
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config:

.github/ci/spack-envs/clang8_py38_mpich_h5_ad2/spack.yaml renamed to .github/ci/spack-envs/gcc13_py312_mpich_h5_ad2/spack.yaml

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Original file line numberDiff line numberDiff line change
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#
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spack:
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specs:
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- adios2@2.7.1
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- hdf5
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- adios2@2.10 +mpi
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- hdf5 +mpi
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- mpich
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packages:
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adios2:
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variants: ~zfp ~sz ~png ~dataman ~python ~fortran ~ssc ~shared ~bzip2
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variants: +mpi ~zfp ~sz ~png ~dataman ~python ~fortran ~ssc ~shared ~bzip2 ~blosc2 ~mgard
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cmake:
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externals:
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- spec: cmake@3.23.0
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prefix: /usr
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- spec: cmake@3.31.6
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prefix: /usr/local
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buildable: False
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hdf5:
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variants: +mpi
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mpich:
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externals:
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- spec: mpich@3.3
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- spec: mpich@4.2.0
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prefix: /usr
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buildable: False
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perl:
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externals:
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- spec: perl@5.26.1
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- spec: perl@5.38.2
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prefix: /usr
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buildable: False
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python:
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externals:
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- spec: python@3.8.0
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- spec: python@3.12.3
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prefix: /usr
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buildable: False
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all:
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target: [x86_64]
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variants: ~fortran
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providers:
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mpi: [mpich]
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compiler: [clang@8.0.0]
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compiler: [gcc@13.3.0]
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compilers:
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- compiler:
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environment: {}
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extra_rpaths: []
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flags: {}
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modules: []
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operating_system: ubuntu20.04
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operating_system: ubuntu24.04
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paths:
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cc: /usr/lib/llvm-8/bin/clang
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cxx: /usr/lib/llvm-8/bin/clang++
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cc: /usr/bin/gcc
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cxx: /usr/bin/g++
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f77: /usr/bin/gfortran
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fc: /usr/bin/gfortran
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spec: clang@8.0.0
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spec: gcc@13.3.0
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target: x86_64
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config:
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build_jobs: 2
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build_jobs: 4
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mirrors:
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E4S: https://cache.e4s.io

.github/workflows/dependencies/install_nvcc11.sh renamed to .github/workflows/dependencies/install_nvcc12.sh

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@@ -15,14 +15,15 @@ sudo apt-get install -y \
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pkg-config \
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wget
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sudo apt-key adv --fetch-keys https://developer.download.nvidia.com/compute/cuda/repos/ubuntu1804/x86_64/3bf863cc.pub
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echo "deb https://developer.download.nvidia.com/compute/cuda/repos/ubuntu1804/x86_64 /" \
18+
sudo apt-key adv --fetch-keys https://developer.download.nvidia.com/compute/cuda/repos/ubuntu2204/x86_64/3bf863cc.pub
19+
echo "deb https://developer.download.nvidia.com/compute/cuda/repos/ubuntu2204/x86_64 /" \
2020
| sudo tee /etc/apt/sources.list.d/cuda.list
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sudo apt-get update
22+
apt search cuda-compiler
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sudo apt-get install -y \
23-
cuda-command-line-tools-11-2 \
24-
cuda-compiler-11-2 \
25-
cuda-cupti-dev-11-2 \
26-
cuda-minimal-build-11-2
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cuda-command-line-tools-12-8 \
25+
cuda-compiler-12-8 \
26+
cuda-cupti-dev-12-8 \
27+
cuda-minimal-build-12-8
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sudo ln -s cuda-11.2 /usr/local/cuda

.github/workflows/dependencies/install_nvhpc21-11.sh renamed to .github/workflows/dependencies/install_nvhpc25-1.sh

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@@ -17,7 +17,7 @@ sudo apt-get install -y \
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echo 'deb [trusted=yes] https://developer.download.nvidia.com/hpc-sdk/ubuntu/amd64 /' | \
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sudo tee /etc/apt/sources.list.d/nvhpc.list
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sudo apt-get update -y
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sudo apt-get install -y --no-install-recommends nvhpc-21-11
20+
sudo apt-get install -y --no-install-recommends nvhpc-25-1
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# things should reside in /opt/nvidia/hpc_sdk now
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