Commit 1cc0e68
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- stable
- _static/img
- modules
- analysis
- FBA
- FVA
- fastFVA
- logFiles
- mex
- old
- ICONGEMs
- KLdistance
- MOMA
- QFCA
- ROOM
- coupling
- deletion
- Syntheticlethals
- Fast-SL
- dynamicFBA
- exploration
- surfNetSubfunctions
- fastForest
- findMIIS
- fluxEnrichmentAnalysis
- gMCS
- geometricFBA
- igemRNA
- GT1
- LT1
- LT2
- calculateFluxShifts
- filterNonFluxReactions
- filterRateLimittingReactions
- findUpDownRegulatedGenes
- inactiveGeneDeletion
- modelCreation
- mdFBA
- multiSpecies
- SteadyCom
- subroutines
- microbiomeModelingToolbox
- additionalAnalysis
- mgPipe
- pairwiseInteractionModeling
- nutritionAlgorithm
- parsimoniousFBA
- percentileCalc
- persephone
- SeqC_pipeline
- seqc_proc
- additionalFunctions
- rFBA
- rMTA
- relaxedFBA
- robustnessAnalysis
- rumba
- sampling
- ACHR
- BarrierRound
- CMatrix
- coverage
- include
- qd
- PolytopeSimplifier
- coverage
- utils
- CHRR
- sparseFBA
- subspaces
- lsqr
- nullspace
- remote
- rank
- rowReduce
- subspaceProjection
- thermo
- componentContribution
- new
- old
- directionalityReport
- old
- experimentalData
- alberty2006
- ecoli
- metaboliteConcentrations
- transport
- experimentalDesign
- findThermoConsistentFluxSubset
- formulae
- groupContribution
- jankowski
- groupContribution
- new
- old
- wang
- .ipynb_checkpoints
- cache
- conda
- inchi
- new
- old
- molFiles
- new
- old
- optCardThermo
- protons
- new
- old
- reactantContribution
- thermoDirectionality
- thermoFBA
- trainingModel
- cache
- data
- mol
- new
- old
- transport
- utilities
- vonBertalanffy
- topology
- FR
- conservedMoieties
- old
- extremeRays
- lrs
- lrsInterface
- optimalRays
- graphHypergraphConversion
- transport
- uFBA
- wholeBody
- Nutrition_Modelling_Toolbox
- PSCMToolbox
- BMRcalculations
- hostMicrobeInteraction
- io
- setConstraints
- diets
- inputData
- organWeight
- io
- base
- ci
- cobrarrow
- codeConsistency
- install
- io
- BiGG
- KEGG
- definitions
- json
- newt
- old
- python
- cobrapy
- condalab
- pyPath
- tmp
- utilities
- SBML
- paths
- solvers
- NLP
- cardOpt
- smoothConcave
- sparseLP
- old
- cplex
- entropicFBA
- gams
- getSetSolver
- gurobi
- init
- lindo
- lp_solve
- mosek
- param
- rescale
- varKin
- BDCAmethods
- derFreeMethods
- levMarMethods
- utilities
- dataIntegration
- XomicsToModel
- analysis
- metabolomics
- oneRxnPerActiveGene
- prepareData
- proteomics
- thermoKernel
- thermoQP
- chemoInformatics
- RXN
- old
- inchi
- metabolites
- molecularWeight
- basicPhysicochemicalData
- reactions
- fluxomics
- atomTransition
- ATN
- c13solver
- metaboAnnotator
- analyseMetStruct
- buildMetStruct
- connect2resources
- generateMetInfo
- molFileFinder
- metabotools
- metanetxMapper
- transcriptomics
- FASTCORE
- GIMME
- INIT
- MBA
- MOOMIN
- SWIFTCORE
- eFlux
- iMAT
- preprocessing
- design
- optEnvelope
- optForceGAMS
- optForce
- reconstruction
- comparison
- modelBorgifier
- gui
- demeter
- src
- debugging
- integration
- properties
- refinement
- suite
- reports
- tests
- fastGapFill
- AuxillaryFiles
- growthExpMatch
- metaboRePort
- other
- modelGeneration
- fluxConsistency
- DCA
- GREEDY
- massBalance
- modelProperties
- modelVerification
- stoichConsistency
- rBioNet
- gui
- refinement
- GPRLogic
- visualization
- EscherMap
- SAMMIM
- cellDesigner
- convert
- createMetIntrcNetwork
- efmviz
- entropicFBA
- maps
- ReconMap
- metabolicCartography
- paint4Net
- Draw_by_met
- Draw_by_rxn
- visualizeEpistasis
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