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    33 repositories

    • pisa-analysis

      Public
      Analysis of interfaces for entry assembly with PISA and writing json files
      Python
      •
      Other
      •2•6•3•1•Updated May 28, 2026May 28, 2026

    • pdbe-kb-shape-benchmark

      Public
      Benchmark dataset for estimating computational resource requirements of shape-matching workflows on PDBe-KB Complexes.
      Jupyter Notebook
      •0•0•0•0•Updated Feb 25, 2026Feb 25, 2026

    • pdbe_shape_retrieval

      Public
      Python module for the calculation of shape descriptors for proteins
      Python
      •
      Other
      •0•1•0•0•Updated Feb 3, 2026Feb 3, 2026

    • pdbe-assemblies-analysis

      Public
      Jupyter notebook for the analysis of macromolecular complexes in the PDB
      Jupyter Notebook
      •
      Other
      •0•3•0•0•Updated Dec 18, 2025Dec 18, 2025

    • pisa

      Public
      PISA
      C++
      •2•5•4•0•Updated Dec 3, 2025Dec 3, 2025

    • pdbe-pisa-json

      Public
      On TBD every PISA API endpoint will be retired and replaced with two new API endpoints
      Jupyter Notebook
      •
      Other
      •1•3•0•0•Updated Sep 10, 2024Sep 10, 2024

    • pdbe_covariations

      Public
      Python
      •
      Apache License 2.0
      •0•2•0•0•Updated Feb 5, 2024Feb 5, 2024

    • funpdbe-validator

      Public
      Python
      •
      Other
      •1•1•1•1•Updated Nov 6, 2023Nov 6, 2023

    • process-complex-data

      Public
      Python
      •
      Apache License 2.0
      •0•2•0•0•Updated Mar 30, 2023Mar 30, 2023

    • pdbe-complex-analysis-demo

      Public
      A demo dataset creation to showcase the complex creation using PDBe Graph Database
      Python
      •
      Other
      •1•1•0•0•Updated Mar 22, 2023Mar 22, 2023

    • sifts_data_analysis

      Public
      Google Colab notebook for accessing up-to-date SIFTS annotations from PDBx/mmCIF files
      Jupyter Notebook
      •
      Apache License 2.0
      •0•3•0•0•Updated Mar 9, 2023Mar 9, 2023

    • pdbe-kb-manual

      Public
      User guides for PDBe-KB pages
      1•8•1•0•Updated Dec 14, 2022Dec 14, 2022

    • pdbe-graph-queries

      Public
      Repository for factoring out cypher queries from the API.
      Python
      •0•0•1•0•Updated Oct 21, 2022Oct 21, 2022

    • python-starter

      Public
      A starter Python package
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Sep 2, 2022Sep 2, 2022

    • pdbe-kb-ligand-pages-api-specs

      Public
      OpenAPI 3 description of PDBe-KB ligand pages created using Apiary. This API is used to feed PDBe-KB ligand pages.
      Apache License 2.0
      •0•0•0•0•Updated Mar 31, 2022Mar 31, 2022

    • component-molstar-dialog

      Public
      TypeScript
      •
      Other
      •0•1•0•0•Updated Feb 9, 2022Feb 9, 2022

    • component-representative-structures

      Public
      TypeScript
      •
      Other
      •0•0•0•0•Updated Feb 9, 2022Feb 9, 2022

    • component-superpose

      Public
      TypeScript
      •
      Other
      •0•0•0•0•Updated Feb 9, 2022Feb 9, 2022

    • component-similar-proteins

      Public
      TypeScript
      •
      Other
      •0•0•0•0•Updated Feb 9, 2022Feb 9, 2022

    • component-summary-icons

      Public
      TypeScript
      •
      Other
      •0•0•0•0•Updated Feb 9, 2022Feb 9, 2022

    • component-polyprotein-section

      Public
      TypeScript
      •
      Other
      •1•2•0•0•Updated Feb 9, 2022Feb 9, 2022

    • component-download

      Public
      TypeScript
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      Other
      •0•0•0•0•Updated Feb 9, 2022Feb 9, 2022

    • component-literature-panel

      Public
      TypeScript
      •
      Other
      •0•0•0•0•Updated Feb 9, 2022Feb 9, 2022

    • component-csv-exporter

      Public
      TypeScript
      •
      Other
      •0•0•0•0•Updated Feb 9, 2022Feb 9, 2022

    • component-multi-view

      Public
      TypeScript
      •
      Other
      •0•0•0•0•Updated Feb 9, 2022Feb 9, 2022

    • component-pdbe-kb-header

      Public
      TypeScript
      •
      Other
      •0•0•0•0•Updated Feb 9, 2022Feb 9, 2022

    • component-summary-text

      Public
      TypeScript
      •
      Other
      •0•0•0•0•Updated Feb 9, 2022Feb 9, 2022

    • component-tutorial

      Public
      TypeScript
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      Other
      •0•0•0•0•Updated Feb 9, 2022Feb 9, 2022

    • component-coverage-table

      Public
      TypeScript
      •
      Other
      •0•0•0•0•Updated Feb 9, 2022Feb 9, 2022

    • component-image-gallery

      Public
      TypeScript
      •
      Other
      •0•0•0•0•Updated Feb 9, 2022Feb 9, 2022
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