Are BiomedicalConceptProperty values populated from the BC dataElementConcepts? #196
Replies: 2 comments 5 replies
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Currently, the Systolic Blood Pressure BC in the USDM appears as: {
"id": "BiomedicalConcept_2",
"extensionAttributes": [],
"name": "SBP1",
"label": "Systolic Blood Pressure",
"synonyms": [
"SYSBP",
"SBP"
],
"reference": "/mdr/specializations/sdtm/packages/2025-04-01/datasetspecializations/SYSBP",
"properties": [
{
"id": "BiomedicalConceptProperty_27",
"extensionAttributes": [],
"name": "VSTESTCD4",
"label": "VSTESTCD",
"isRequired": true,
"isEnabled": true,
"datatype": "",
"responseCodes": [],
"code": {
"id": "AliasCode_52",
"extensionAttributes": [],
"standardCode": {
"id": "Code_209",
"extensionAttributes": [],
"code": "C25298",
"codeSystem": "http://www.cdisc.org",
"codeSystemVersion": "2025-09-26",
"decode": "SYSBP",
"instanceType": "Code"
},
"standardCodeAliases": [],
"instanceType": "AliasCode"
},
"notes": [],
"instanceType": "BiomedicalConceptProperty"
},
{
"id": "BiomedicalConceptProperty_28",
"extensionAttributes": [],
"name": "VSORRES_4",
"label": "VSORRES",
"isRequired": true,
"isEnabled": true,
"datatype": "integer",
"responseCodes": [],
"code": {
"id": "AliasCode_53",
"extensionAttributes": [],
"standardCode": {
"id": "Code_210",
"extensionAttributes": [],
"code": "C70856",
"codeSystem": "http://www.cdisc.org",
"codeSystemVersion": "2025-09-26",
"decode": "Observation Result",
"instanceType": "Code"
},
"standardCodeAliases": [],
"instanceType": "AliasCode"
},
"notes": [],
"instanceType": "BiomedicalConceptProperty"
},
{
"id": "BiomedicalConceptProperty_29",
"extensionAttributes": [],
"name": "VSORRESU_4",
"label": "VSORRESU",
"isRequired": true,
"isEnabled": true,
"datatype": "",
"responseCodes": [],
"code": {
"id": "AliasCode_54",
"extensionAttributes": [],
"standardCode": {
"id": "Code_211",
"extensionAttributes": [],
"code": "C49669",
"codeSystem": "http://www.cdisc.org",
"codeSystemVersion": "2025-09-26",
"decode": "Unit of Pressure",
"instanceType": "Code"
},
"standardCodeAliases": [],
"instanceType": "AliasCode"
},
"notes": [],
"instanceType": "BiomedicalConceptProperty"
},
{
"id": "BiomedicalConceptProperty_30",
"extensionAttributes": [],
"name": "VSPOS_1",
"label": "VSPOS",
"isRequired": true,
"isEnabled": true,
"datatype": "",
"responseCodes": [
{
"id": "ResponseCode_22",
"extensionAttributes": [],
"name": "RC_C62165_1",
"label": "",
"isEnabled": true,
"code": {
"id": "Code_212",
"extensionAttributes": [],
"code": "C62165",
"codeSystem": "http://www.cdisc.org",
"codeSystemVersion": "2025-09-26",
"decode": "Prone Position",
"instanceType": "Code"
},
"instanceType": "ResponseCode"
},
{
"id": "ResponseCode_23",
"extensionAttributes": [],
"name": "RC_C111310_1",
"label": "",
"isEnabled": true,
"code": {
"id": "Code_213",
"extensionAttributes": [],
"code": "C111310",
"codeSystem": "http://www.cdisc.org",
"codeSystemVersion": "2025-09-26",
"decode": "Semi-Recumbent",
"instanceType": "Code"
},
"instanceType": "ResponseCode"
},
{
"id": "ResponseCode_24",
"extensionAttributes": [],
"name": "RC_C62122_1",
"label": "",
"isEnabled": true,
"code": {
"id": "Code_214",
"extensionAttributes": [],
"code": "C62122",
"codeSystem": "http://www.cdisc.org",
"codeSystemVersion": "2025-09-26",
"decode": "Sitting",
"instanceType": "Code"
},
"instanceType": "ResponseCode"
},
{
"id": "ResponseCode_25",
"extensionAttributes": [],
"name": "RC_C62166_1",
"label": "",
"isEnabled": true,
"code": {
"id": "Code_215",
"extensionAttributes": [],
"code": "C62166",
"codeSystem": "http://www.cdisc.org",
"codeSystemVersion": "2025-09-26",
"decode": "Standing",
"instanceType": "Code"
},
"instanceType": "ResponseCode"
},
{
"id": "ResponseCode_26",
"extensionAttributes": [],
"name": "RC_C62167_1",
"label": "",
"isEnabled": true,
"code": {
"id": "Code_216",
"extensionAttributes": [],
"code": "C62167",
"codeSystem": "http://www.cdisc.org",
"codeSystemVersion": "2025-09-26",
"decode": "Supine Position",
"instanceType": "Code"
},
"instanceType": "ResponseCode"
}
],
"code": {
"id": "AliasCode_55",
"extensionAttributes": [],
"standardCode": {
"id": "Code_217",
"extensionAttributes": [],
"code": "C62164",
"codeSystem": "http://www.cdisc.org",
"codeSystemVersion": "2025-09-26",
"decode": "Body Position",
"instanceType": "Code"
},
"standardCodeAliases": [],
"instanceType": "AliasCode"
},
"notes": [],
"instanceType": "BiomedicalConceptProperty"
},
{
"id": "BiomedicalConceptProperty_31",
"extensionAttributes": [],
"name": "VSLOC_2",
"label": "VSLOC",
"isRequired": true,
"isEnabled": true,
"datatype": "",
"responseCodes": [
{
"id": "ResponseCode_27",
"extensionAttributes": [],
"name": "RC_C12681_1",
"label": "",
"isEnabled": true,
"code": {
"id": "Code_218",
"extensionAttributes": [],
"code": "C12681",
"codeSystem": "http://www.cdisc.org",
"codeSystemVersion": "2025-09-26",
"decode": "Brachial Artery",
"instanceType": "Code"
},
"instanceType": "ResponseCode"
},
{
"id": "ResponseCode_28",
"extensionAttributes": [],
"name": "RC_C12687_1",
"label": "",
"isEnabled": true,
"code": {
"id": "Code_219",
"extensionAttributes": [],
"code": "C12687",
"codeSystem": "http://www.cdisc.org",
"codeSystemVersion": "2025-09-26",
"decode": "Common Carotid Artery",
"instanceType": "Code"
},
"instanceType": "ResponseCode"
},
{
"id": "ResponseCode_29",
"extensionAttributes": [],
"name": "RC_C32478_1",
"label": "",
"isEnabled": true,
"code": {
"id": "Code_220",
"extensionAttributes": [],
"code": "C32478",
"codeSystem": "http://www.cdisc.org",
"codeSystemVersion": "2025-09-26",
"decode": "Dorsalis Pedis Artery",
"instanceType": "Code"
},
"instanceType": "ResponseCode"
},
{
"id": "ResponseCode_30",
"extensionAttributes": [],
"name": "RC_C12715_1",
"label": "",
"isEnabled": true,
"code": {
"id": "Code_221",
"extensionAttributes": [],
"code": "C12715",
"codeSystem": "http://www.cdisc.org",
"codeSystemVersion": "2025-09-26",
"decode": "Femoral Artery",
"instanceType": "Code"
},
"instanceType": "ResponseCode"
},
{
"id": "ResponseCode_31",
"extensionAttributes": [],
"name": "RC_C32608_1",
"label": "",
"isEnabled": true,
"code": {
"id": "Code_222",
"extensionAttributes": [],
"code": "C32608",
"codeSystem": "http://www.cdisc.org",
"codeSystemVersion": "2025-09-26",
"decode": "Finger",
"instanceType": "Code"
},
"instanceType": "ResponseCode"
},
{
"id": "ResponseCode_32",
"extensionAttributes": [],
"name": "RC_C12838_1",
"label": "",
"isEnabled": true,
"code": {
"id": "Code_223",
"extensionAttributes": [],
"code": "C12838",
"codeSystem": "http://www.cdisc.org",
"codeSystemVersion": "2025-09-26",
"decode": "Radial Artery",
"instanceType": "Code"
},
"instanceType": "ResponseCode"
}
],
"code": {
"id": "AliasCode_56",
"extensionAttributes": [],
"standardCode": {
"id": "Code_224",
"extensionAttributes": [],
"code": "C13717",
"codeSystem": "http://www.cdisc.org",
"codeSystemVersion": "2025-09-26",
"decode": "Anatomic Site",
"instanceType": "Code"
},
"standardCodeAliases": [],
"instanceType": "AliasCode"
},
"notes": [],
"instanceType": "BiomedicalConceptProperty"
},
{
"id": "BiomedicalConceptProperty_32",
"extensionAttributes": [],
"name": "VSLAT_1",
"label": "VSLAT",
"isRequired": true,
"isEnabled": true,
"datatype": "",
"responseCodes": [
{
"id": "ResponseCode_33",
"extensionAttributes": [],
"name": "RC_C25229_1",
"label": "",
"isEnabled": true,
"code": {
"id": "Code_225",
"extensionAttributes": [],
"code": "C25229",
"codeSystem": "http://www.cdisc.org",
"codeSystemVersion": "2025-09-26",
"decode": "Left",
"instanceType": "Code"
},
"instanceType": "ResponseCode"
},
{
"id": "ResponseCode_34",
"extensionAttributes": [],
"name": "RC_C25228_1",
"label": "",
"isEnabled": true,
"code": {
"id": "Code_226",
"extensionAttributes": [],
"code": "C25228",
"codeSystem": "http://www.cdisc.org",
"codeSystemVersion": "2025-09-26",
"decode": "Right",
"instanceType": "Code"
},
"instanceType": "ResponseCode"
}
],
"code": {
"id": "AliasCode_57",
"extensionAttributes": [],
"standardCode": {
"id": "Code_227",
"extensionAttributes": [],
"code": "C25185",
"codeSystem": "http://www.cdisc.org",
"codeSystemVersion": "2025-09-26",
"decode": "Laterality",
"instanceType": "Code"
},
"standardCodeAliases": [],
"instanceType": "AliasCode"
},
"notes": [],
"instanceType": "BiomedicalConceptProperty"
},
{
"id": "BiomedicalConceptProperty_33",
"extensionAttributes": [],
"name": "VSDTC_4",
"label": "VSDTC",
"isRequired": true,
"isEnabled": true,
"datatype": "",
"responseCodes": [],
"code": {
"id": "AliasCode_58",
"extensionAttributes": [],
"standardCode": {
"id": "Code_228",
"extensionAttributes": [],
"code": "C82515",
"codeSystem": "http://www.cdisc.org",
"codeSystemVersion": "2025-09-26",
"decode": "Collection Date Time",
"instanceType": "Code"
},
"standardCodeAliases": [],
"instanceType": "AliasCode"
},
"notes": [],
"instanceType": "BiomedicalConceptProperty"
}
],
"code": {
"id": "AliasCode_59",
"extensionAttributes": [],
"standardCode": {
"id": "Code_229",
"extensionAttributes": [],
"code": "C25298",
"codeSystem": "http://www.cdisc.org",
"codeSystemVersion": "2025-09-26",
"decode": "SYSBP",
"instanceType": "Code"
},
"standardCodeAliases": [],
"instanceType": "AliasCode"
},
"notes": [],
"instanceType": "BiomedicalConcept"
} |
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Here is the API response for the DSS SYSBP: {
"_links": {
"parentBiomedicalConcept": {
"href": "/mdr/bc/biomedicalconcepts/C25298",
"title": "Systolic Blood Pressure",
"type": "Biomedical Concept"
},
"parentPackage": {
"href": "/mdr/specializations/sdtm/packages/2025-04-01/datasetspecializations",
"title": "SDTM Dataset Specialization Package Effective 2025-04-01",
"type": "SDTM Dataset Specialization Package"
},
"self": {
"href": "/mdr/specializations/sdtm/datasetspecializations/SYSBP",
"title": "Systolic Blood Pressure",
"type": "SDTM Dataset Specialization"
}
},
"datasetSpecializationId": "SYSBP",
"domain": "VS",
"shortName": "Systolic Blood Pressure",
"source": "VS.VSTESTCD",
"sdtmigStartVersion": "3-2",
"sdtmigEndVersion": "",
"variables": [
{
"name": "VSTESTCD",
"isNonStandard": false,
"codelist": {
"conceptId": "C66741",
"submissionValue": "VSTESTCD",
"href": "https://evsexplore.semantics.cancer.gov/evsexplore/concept/ncit/C66741"
},
"assignedTerm": {
"conceptId": "C25298",
"value": "SYSBP"
},
"role": "Topic",
"relationship": {
"subject": "VSTESTCD",
"linkingPhrase": "is the code for the value in",
"predicateTerm": "IS_DECODED_BY",
"object": "VSTEST"
},
"mandatoryVariable": true,
"mandatoryValue": false,
"comparator": "EQ"
},
{
"name": "VSTEST",
"isNonStandard": false,
"codelist": {
"conceptId": "C67153",
"submissionValue": "VSTEST",
"href": "https://evsexplore.semantics.cancer.gov/evsexplore/concept/ncit/C67153"
},
"assignedTerm": {
"conceptId": "C25298",
"value": "Systolic Blood Pressure"
},
"role": "Qualifier",
"relationship": {
"subject": "VSTEST",
"linkingPhrase": "decodes the value in",
"predicateTerm": "DECODES",
"object": "VSTESTCD"
},
"mandatoryVariable": true,
"mandatoryValue": false
},
{
"name": "VSORRES",
"dataElementConceptId": "C70856",
"isNonStandard": false,
"role": "Qualifier",
"dataType": "integer",
"length": 3,
"relationship": {
"subject": "VSORRES",
"linkingPhrase": "is the result of the test in",
"predicateTerm": "IS_RESULT_OF",
"object": "VSTESTCD"
},
"mandatoryVariable": true,
"mandatoryValue": false,
"originType": "Collected",
"originSource": "Investigator",
"vlmTarget": true
},
{
"name": "VSORRESU",
"dataElementConceptId": "C49669",
"isNonStandard": false,
"codelist": {
"conceptId": "C66770",
"submissionValue": "VSRESU",
"href": "https://evsexplore.semantics.cancer.gov/evsexplore/concept/ncit/C66770"
},
"assignedTerm": {
"conceptId": "C49670",
"value": "mmHg"
},
"role": "Qualifier",
"relationship": {
"subject": "VSORRESU",
"linkingPhrase": "is the unit for the value in",
"predicateTerm": "IS_UNIT_FOR",
"object": "VSORRES"
},
"mandatoryVariable": true,
"mandatoryValue": false,
"vlmTarget": true
},
{
"name": "VSSTRESC",
"dataElementConceptId": "C70856",
"isNonStandard": false,
"role": "Qualifier",
"dataType": "integer",
"length": 3,
"relationship": {
"subject": "VSSTRESC",
"linkingPhrase": "is the result of the test in",
"predicateTerm": "IS_RESULT_OF",
"object": "VSTESTCD"
},
"mandatoryVariable": false,
"mandatoryValue": false,
"vlmTarget": true
},
{
"name": "VSSTRESN",
"dataElementConceptId": "C70856",
"isNonStandard": false,
"role": "Qualifier",
"dataType": "integer",
"length": 3,
"relationship": {
"subject": "VSSTRESN",
"linkingPhrase": "is the result of the test in",
"predicateTerm": "IS_RESULT_OF",
"object": "VSTESTCD"
},
"mandatoryVariable": false,
"mandatoryValue": false,
"vlmTarget": true
},
{
"name": "VSSTRESU",
"dataElementConceptId": "C49669",
"isNonStandard": false,
"codelist": {
"conceptId": "C66770",
"submissionValue": "VSRESU",
"href": "https://evsexplore.semantics.cancer.gov/evsexplore/concept/ncit/C66770"
},
"assignedTerm": {
"conceptId": "C49670",
"value": "mmHg"
},
"role": "Qualifier",
"relationship": {
"subject": "VSSTRESU",
"linkingPhrase": "is the unit for the value in",
"predicateTerm": "IS_UNIT_FOR",
"object": "VSSTRESN"
},
"mandatoryVariable": false,
"mandatoryValue": false,
"vlmTarget": true
},
{
"name": "VSPOS",
"dataElementConceptId": "C62164",
"isNonStandard": false,
"codelist": {
"conceptId": "C71148",
"submissionValue": "POSITION",
"href": "https://evsexplore.semantics.cancer.gov/evsexplore/concept/ncit/C71148"
},
"valueList": [
"PRONE",
"SEMI-RECUMBENT",
"SITTING",
"STANDING",
"SUPINE"
],
"role": "Qualifier",
"relationship": {
"subject": "VSPOS",
"linkingPhrase": "is the subject position during performance of the test in",
"predicateTerm": "IS_SUBJECT_STATE_FOR",
"object": "VSTESTCD"
},
"mandatoryVariable": false,
"mandatoryValue": false,
"comparator": "IN"
},
{
"name": "VSLOC",
"dataElementConceptId": "C13717",
"isNonStandard": false,
"codelist": {
"conceptId": "C74456",
"submissionValue": "LOC",
"href": "https://evsexplore.semantics.cancer.gov/evsexplore/concept/ncit/C74456"
},
"valueList": [
"BRACHIAL ARTERY",
"CAROTID ARTERY",
"DORSALIS PEDIS ARTERY",
"FEMORAL ARTERY",
"FINGER",
"PERIPHERAL ARTERY",
"RADIAL ARTERY"
],
"role": "Qualifier",
"relationship": {
"subject": "VSLOC",
"linkingPhrase": "specifies the anatomical location of the performance of the test in",
"predicateTerm": "SPECIFIES",
"object": "VSTESTCD"
},
"mandatoryVariable": false,
"mandatoryValue": false,
"comparator": "IN"
},
{
"name": "VSLAT",
"dataElementConceptId": "C25185",
"isNonStandard": false,
"codelist": {
"conceptId": "C99073",
"submissionValue": "LAT",
"href": "https://evsexplore.semantics.cancer.gov/evsexplore/concept/ncit/C99073"
},
"subsetCodelist": "VSLAT_BP",
"valueList": [
"LEFT",
"RIGHT"
],
"role": "Qualifier",
"relationship": {
"subject": "VSLAT",
"linkingPhrase": "further specifies the anatomical location in",
"predicateTerm": "SPECIFIES",
"object": "VSLOC"
},
"mandatoryVariable": false,
"mandatoryValue": false,
"comparator": "IN"
},
{
"name": "VSDTC",
"dataElementConceptId": "C82515",
"isNonStandard": false,
"role": "Timing",
"relationship": {
"subject": "VSDTC",
"linkingPhrase": "is the date of occurrence for",
"predicateTerm": "IS_TIMING_FOR",
"object": "VSTESTCD"
},
"mandatoryVariable": true,
"mandatoryValue": false
}
]
} |
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Folloing our conversations this week, the USDM available in the 360i repo (https://github.com/cdisc-org/360i/blob/main/data/protocol/LZZT/usdm/CDISC_Pilot_Study_v4.json) does not appear to include the correct values.
The DSS are used to populate the BiomedicalConceptProperty values.
From what I now understand, the data element concepts associated with a BiomedicalConcept are supposed to represent the BiomedicalConceptProperty values.
I have questions around how to populate a BiomedicalConcept Property.
I cannot see how the API response can be used to populate BIomedical Concept Properties in the USDM JSON.
Here is the API response when requesting a BC: https://api.library.cdisc.org/api/cosmos/v2/mdr/bc/biomedicalconcepts/C25298
{ "_links": { "parentBiomedicalConcept": { "href": "/mdr/bc/biomedicalconcepts/C54706", "title": "Blood Pressure", "type": "Biomedical Concept" }, "parentPackage": { "href": "/mdr/bc/packages/2025-12-16/biomedicalconcepts", "title": "Biomedical Concept Package Effective 2025-12-16", "type": "Biomedical Concept Package" }, "self": { "href": "/mdr/bc/biomedicalconcepts/C25298", "title": "Systolic Blood Pressure", "type": "Biomedical Concept" } }, "conceptId": "C25298", "href": "https://evsexplore.semantics.cancer.gov/evsexplore/concept/ncit/C25298", "categories": [ "Vital Signs", "Blood Pressure" ], "shortName": "Systolic Blood Pressure", "synonyms": [ "SYSBP" ], "resultScales": [ "Quantitative" ], "definition": "The maximum pressure exerted into the systemic arterial circulation during the contraction of the left ventricle of the heart.", "coding": [ { "code": "8480-6", "system": "http://loinc.org/", "systemName": "LOINC" } ], "dataElementConcepts": [ { "conceptId": "C82535", "href": "https://evsexplore.semantics.cancer.gov/evsexplore/concept/ncit/C82535", "shortName": "Test Method", "dataType": "string", "exampleSet": [ "Auscultation automatic", "Auscultation manual", "Cuff-manual palpated", "Doppler", "Oscillometry", "Arterial line", "Venous line", "Continuous noninvasive arterial pressure (CNAP)" ], "ncitCode": "C82535" }, { "conceptId": "C62164", "href": "https://evsexplore.semantics.cancer.gov/evsexplore/concept/ncit/C62164", "shortName": "Body Position", "dataType": "string", "exampleSet": [ "Decubitus", "Fowlers", "Lateral Decubitus", "Left Lateral Decubitus", "Prone", "Reverse Trendelenburg", "Right Lateral Decubitus", "Semi-Fowlers", "Semi-Recumbent", "Sitting", "Sitting, Legs Dependent", "Sling", "Standing", "Standing, Bent Forward", "Supine", "Trendelenburg", "Unconstrained" ], "ncitCode": "C62164" }, { "conceptId": "C70856", "href": "https://evsexplore.semantics.cancer.gov/evsexplore/concept/ncit/C70856", "shortName": "Observation Result", "dataType": "decimal", "ncitCode": "C70856" }, { "conceptId": "C49669", "href": "https://evsexplore.semantics.cancer.gov/evsexplore/concept/ncit/C49669", "shortName": "Unit of Pressure", "dataType": "string", "exampleSet": [ "cmHg", "mmHG", "Pascal" ], "ncitCode": "C49669" }, { "conceptId": "C13717", "href": "https://evsexplore.semantics.cancer.gov/evsexplore/concept/ncit/C13717", "shortName": "Anatomic Site", "dataType": "string", "exampleSet": [ "Arm", "Forearm", "Thigh", "Calf", "Artery", "Vein" ], "ncitCode": "C13717" }, { "conceptId": "C25185", "href": "https://evsexplore.semantics.cancer.gov/evsexplore/concept/ncit/C25185", "shortName": "Laterality", "dataType": "string", "exampleSet": [ "Left", "Right" ], "ncitCode": "C25185" }, { "conceptId": "C82515", "href": "https://evsexplore.semantics.cancer.gov/evsexplore/concept/ncit/C82515", "shortName": "Collection Date Time", "dataType": "datetime", "ncitCode": "C82515" } ], "ncitCode": "C25298" }Beta Was this translation helpful? Give feedback.
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