Fix import sorting across entire project with isort

- Fix import order in root-level Python files
- Fix import order in tests/ directory
- Fix import order in docs/ directory
- Fix import order in examples/ directory
- Fix import order in backup files

All files now pass isort checks for CI/CD pipeline.

Author: petermr

colab_test.py

@@ -6,8 +6,8 @@
 using the new run_pygetpapers function.
 """
 
-import sys
 import os
+import sys
 
 
 def test_installation():

demo_lantana_search.py

@@ -4,8 +4,8 @@
 Shows the complete process from search to download.
 """
 
-import sys
 import json
+import sys
 from pathlib import Path
 
 # Add the project root to the path

docs/convert_to_pptx.py

@@ -5,10 +5,11 @@
 
 import re
 from pathlib import Path
+
 from pptx import Presentation
-from pptx.util import Inches, Pt
-from pptx.enum.text import PP_ALIGN
 from pptx.dml.color import RGBColor
+from pptx.enum.text import PP_ALIGN
+from pptx.util import Inches, Pt
 
 
 def parse_markdown_slides(markdown_file):

docs/convert_value_story.py

@@ -5,10 +5,11 @@
 
 import re
 from pathlib import Path
+
 from pptx import Presentation
-from pptx.util import Inches, Pt
-from pptx.enum.text import PP_ALIGN
 from pptx.dml.color import RGBColor
+from pptx.enum.text import PP_ALIGN
+from pptx.util import Inches, Pt
 
 
 def parse_markdown_slides(markdown_file):

docs/scielo/scielo_exploration.py

@@ -13,13 +13,14 @@
     python temp/scielo_exploration.py
 """
 
-import requests
-import time
 import json
+import logging
+import time
 from pathlib import Path
-from urllib.parse import urljoin, urlparse, parse_qs
+from urllib.parse import parse_qs, urljoin, urlparse
+
+import requests
 from bs4 import BeautifulSoup
-import logging
 
 # Set up logging
 logging.basicConfig(

docs/scielo/test_article_page.py

@@ -6,11 +6,12 @@
 the structure of individual article pages.
 """
 
-import requests
+import json
 import time
-from bs4 import BeautifulSoup
 from pathlib import Path
-import json
+
+import requests
+from bs4 import BeautifulSoup
 
 
 def test_article_page():

docs/scielo/test_scielo_basic.py

@@ -6,17 +6,18 @@
 with climate change examples to verify functionality.
 """
 
-import sys
 import os
+import sys
 from pathlib import Path
 
 # Add the project root to the Python path
 project_root = Path(__file__).parent.parent
 sys.path.insert(0, str(project_root))
 
-from pygetpapers.repositories.scielo.scielo import SciELO
 import logging
 
+from pygetpapers.repositories.scielo.scielo import SciELO
+
 # Set up logging
 logging.basicConfig(
     level=logging.INFO, format="%(asctime)s - %(levelname)s - %(message)s"

example_pdf_conversion.py

@@ -7,6 +7,7 @@
 """
 
 from pathlib import Path
+
 from pdf_to_html_converter import PDFToHTMLConverter
 
 

examples/abstract_functionality_example.py

@@ -6,8 +6,8 @@
 PURPOSE: Demonstrate abstract extraction, analysis, and table creation
 """
 
-import sys
 import os
+import sys
 from pathlib import Path
 
 # Add the pygetpapers directory to the path

examples/convert_pdf_to_hocr.py

@@ -8,9 +8,10 @@
 """
 
 import sys
-import pdfplumber
 from pathlib import Path
-from typing import List, Dict, Any
+from typing import Any, Dict, List
+
+import pdfplumber
 
 # Add the pygetpapers directory to the path
 sys.path.insert(0, str(Path(__file__).parent.parent))