Merge pull request #3 from pfizer-opensource/copilot/add-r-cmd-check-workflow

Add R-CMD-check workflow

Author: Rvirgenslane

.github/workflows/R-CMD-check.yml

@@ -0,0 +1,55 @@
+on:
+  push:
+    branches: [main]
+  pull_request:
+    branches: [main]
+
+name: R-CMD-check
+
+permissions:
+  contents: read
+
+jobs:
+  R-CMD-check:
+    runs-on: ${{ matrix.config.os }}
+
+    name: ${{ matrix.config.os }} (${{ matrix.config.r }})
+
+    strategy:
+      fail-fast: false
+      matrix:
+        config:
+          - {os: windows-latest, r: 'release'}
+          - {os: macos-14,       r: 'release'}
+          - {os: ubuntu-latest,  r: 'release'}
+          - {os: ubuntu-latest,  r: 'oldrel'}
+
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+      R_KEEP_PKG_SOURCE: yes
+
+    steps:
+      - uses: actions/checkout@34e114876b0b11c390a56381ad16ebd13914f8d5 # v4.3.1
+
+      - uses: r-lib/actions/setup-pandoc@6f6e5bc62fba3a704f74e7ad7ef7676c5c6a2590 # v2.11.4
+
+      - uses: r-lib/actions/setup-r@6f6e5bc62fba3a704f74e7ad7ef7676c5c6a2590 # v2.11.4
+        with:
+          r-version: ${{ matrix.config.r }}
+          use-public-rspm: true
+
+      - name: Set up Bioconductor repos
+        run: |
+          install.packages("BiocManager")
+          BiocManager::install(version = BiocManager::version(), ask = FALSE, update = FALSE)
+        shell: Rscript {0}
+
+      - uses: r-lib/actions/setup-r-dependencies@6f6e5bc62fba3a704f74e7ad7ef7676c5c6a2590 # v2.11.4
+        with:
+          extra-packages: any::rcmdcheck, any::BiocManager
+          needs: check
+
+      - uses: r-lib/actions/check-r-package@6f6e5bc62fba3a704f74e7ad7ef7676c5c6a2590 # v2.11.4
+        with:
+          upload-snapshots: true
+          error-on: '"error"'