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Add citation support and prepare DESCRIPTION for Bioconductor submission #17

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Copilot Jun 25, 2026
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Add citation support and prepare DESCRIPTION for Bioconductor submission
Copilot Jun 25, 2026
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26 changes: 26 additions & 0 deletions CITATION.cff
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Original file line number Diff line number Diff line change
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cff-version: 1.2.0
message: "If you use this software, please cite the associated article."
title: "Hotgenes: an R package for reducing bottlenecks in bulk omics data exploration and collaboration"
authors:
- family-names: Virgen-Slane
given-names: Richard
orcid: "https://orcid.org/0000-0002-0011-3844"
email: Richard.Virgen-Slane@pfizer.com
type: article
journal: "Bioinformatics"
year: 2026
identifiers:
- type: doi
value: 10.1093/bioinformatics/btag434
preferred-citation:
type: article
title: "Hotgenes: an R package for reducing bottlenecks in bulk omics data exploration and collaboration"
authors:
- family-names: Virgen-Slane
given-names: Richard
orcid: "https://orcid.org/0000-0002-0011-3844"
journal: "Bioinformatics"
year: 2026
pages: btag434
doi: 10.1093/bioinformatics/btag434
url: "https://doi.org/10.1093/bioinformatics/btag434"
7 changes: 5 additions & 2 deletions DESCRIPTION
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@@ -1,7 +1,7 @@
Package: Hotgenes
Type: Package
Title: Tools to simplify Omics DE Analysis
Version: 0.0.56
Version: 0.99.0
Authors@R: person(
given = "Richard",
family = "Virgen-Slane",
Expand All @@ -14,8 +14,11 @@ Description: Converts outputs from DESeq2, DRomics, limma, or a method of your
hierarchical clustering on principal components.
License: Apache License (>= 2) | file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.3.3
URL: https://github.com/pfizer-opensource/Open-Hotgenes
BugReports: https://github.com/pfizer-opensource/Open-Hotgenes/issues
biocViews: Software, GeneExpression, DifferentialExpression, RNASeq,
Transcriptomics, PrincipalComponent, Clustering, Visualization, Shiny
Imports:
cli,
factoextra,
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12 changes: 12 additions & 0 deletions inst/CITATION
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bibentry(
bibtype = "Article",
title = "Hotgenes: an R package for reducing bottlenecks in bulk omics data exploration and collaboration",
author = person("Richard", "Virgen-Slane",
email = "Richard.Virgen-Slane@pfizer.com",
comment = c(ORCID = "0000-0002-0011-3844")),
journal = "Bioinformatics",
year = "2026",
pages = "btag434",
doi = "10.1093/bioinformatics/btag434",
url = "https://doi.org/10.1093/bioinformatics/btag434"
)
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