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File format specifications for output files

Status: Open.

#92 In pinellolab/CRISPR_Pipeline;

· ian-whaling opened on May 14, 2026

flat file for QC metrics

Status: Open.

#90 In pinellolab/CRISPR_Pipeline;

· ian-whaling opened on May 8, 2026

additional fields for per-guide and per-element outputs

Status: Open.

#87 In pinellolab/CRISPR_Pipeline;

· ian-whaling opened on May 8, 2026

config needs versioning

Status: Open.

#82 In pinellolab/CRISPR_Pipeline;

· ian-whaling opened on May 6, 2026

Spacer not detected in regions with lower sequence quality

TroubleshootingTroubleshooting the CRISPR-FG pipelineTroubleshooting the CRISPR-FG pipeline

Status: Open.

Bug

#79 In pinellolab/CRISPR_Pipeline;

· LucasSilvaFerreira opened on May 4, 2026

Issue when using HTOs with 10X 3' v3 data

Status: Open.

#77 In pinellolab/CRISPR_Pipeline;

· alexbarrera opened on May 4, 2026

example_gasperini metadata is outdated.

Status: Open.

#6 In pinellolab/CRISPR_Pipeline;

· Patrick-McKeever opened on Apr 14, 2025