Fix issue with numpy long not being supported in cython 3.1.0#536
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matandro wants to merge 1 commit into
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Fix issue with numpy long not being supported in cython 3.1.0#536matandro wants to merge 1 commit into
matandro wants to merge 1 commit into
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with guidance from @mvattiku |
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Building the latest version of CRISPresso2 from python fails because the project.toml uses Cython 3.1.0 that no longer supports the
longtype. See: #535CRITICAL @ Fri, 16 May 2025 17:02:58 (0.5% done): Traceback (most recent call last): File "/usr/local/lib/python3.12/site-packages/CRISPResso2/CRISPRessoCORE.py", line 1429, in main aln_matrix = CRISPResso2Align.read_matrix(aln_matrix_loc) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "CRISPResso2/CRISPResso2Align.pyx", line 43, in CRISPResso2.CRISPResso2Align.read_matrix File "CRISPResso2/CRISPResso2Align.pyx", line 51, in CRISPResso2.CRISPResso2Align.read_matrix NameError: name 'long' is not defined CRITICAL @ Fri, 16 May 2025 17:02:58 (0.5% done): Unexpected error, please check your input. ERROR: name 'long' is not definedThis PR sticks the version of the project.toml to built it with a previous cython version.
Solution found by @rohan-mammothbio