Merge pull request #47 from pnlbwh/containers

Move to miniforge, correct wget command

Author: tashrifbillah

README.md

@@ -112,7 +112,7 @@ If your data does not satisfy these requirements, please open an issue [here](ht
 Step-by-step installation instruction can be found [here](https://github.com/pnlbwh/dMRIharmonization/blob/c5bc02149d9e0f96402b3fabc90c2d7bb0e87fe5/README.md).
 But for ease of use, we provide a [Singularity](Singularity) container. Download it as:
 
-    wget https://www.dropbox.com/scl/fi/onkvy3gdvw99m05v0c52q/dMRIharmonization.sif?rlkey=qptch5779p0h9y3vkz55v0s9g&st=inlduybh&dl=0
+    wget "https://www.dropbox.com/scl/fi/onkvy3gdvw99m05v0c52q/dMRIharmonization.sif?rlkey=qptch5779p0h9y3vkz55v0s9g&st=inlduybh&dl=0" -O dMRIharmonization.sif
 
 You should bind your data and shell into the container to use it:
 

Singularity

@@ -24,11 +24,11 @@ From: redhat/ubi9:9.5-1738643550
     rm -rf /var/cache/yum
 
     REPO=multi-shell-dMRIharmonization
-    git clone --single-branch --branch containers https://github.com/pnlbwh/$REPO.git
+    git clone --single-branch --branch master https://github.com/pnlbwh/$REPO.git
 
     # conda environment
-    wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh
-    bash Miniconda3-latest-Linux-x86_64.sh -b -p miniconda3
+    wget https://github.com/conda-forge/miniforge/releases/latest/download/Miniforge3-Linux-x86_64.sh
+    bash Miniforge3-Linux-x86_64.sh -b -p miniconda3
     source miniconda3/bin/activate
     conda create -y -n harmonization -c conda-forge --override-channels python=3.8
     conda activate harmonization