Merge pull request #25 from pnlbwh/replace-tmp

replace /tmp with gettempdir()

Author: tashrifbillah

lib/buildTemplate.py

@@ -23,7 +23,7 @@
 eps= 2.2204e-16
 SCRIPTDIR= dirname(__file__)
 config = ConfigParser()
-config.read(f'/tmp/harm_config_{getpid()}.ini')
+config.read(pjoin(gettempdir(),f'harm_config_{getpid()}.ini'))
 N_shm = int(config['DEFAULT']['N_shm'])
 N_proc = int(config['DEFAULT']['N_proc'])
 bshell_b = int(config['DEFAULT']['bshell_b'])

lib/debug_fa.py

@@ -23,7 +23,7 @@
 mniTmp = pjoin(ROOTDIR, 'IITAtlas', 'IITmean_FA.nii.gz')
 
 config = ConfigParser()
-config.read(f'/tmp/harm_config_{getpid()}.ini')
+config.read(pjoin(gettempdir(),f'harm_config_{getpid()}.ini'))
 N_proc = int(config['DEFAULT']['N_proc'])
 diffusionMeasures = [x for x in config['DEFAULT']['diffusionMeasures'].split(',')]
 bshell_b = int(config['DEFAULT']['bshell_b'])

lib/preprocess.py

@@ -24,7 +24,7 @@
 
 SCRIPTDIR= dirname(__file__)
 config = ConfigParser()
-config.read(f'/tmp/harm_config_{getpid()}.ini')
+config.read(pjoin(gettempdir(),f'harm_config_{getpid()}.ini'))
 
 N_shm = int(config['DEFAULT']['N_shm'])
 N_proc = int(config['DEFAULT']['N_proc'])

lib/reconstSignal.py

@@ -24,7 +24,7 @@
 eps= 2.2204e-16
 SCRIPTDIR= dirname(__file__)
 config = ConfigParser()
-config.read(f'/tmp/harm_config_{getpid()}.ini')
+config.read(pjoin(gettempdir(),f'harm_config_{getpid()}.ini'))
 N_shm = int(config['DEFAULT']['N_shm'])
 N_proc = int(config['DEFAULT']['N_proc'])
 bshell_b = int(config['DEFAULT']['bshell_b'])

lib/util.py

@@ -18,6 +18,7 @@
 from shutil import copyfile, rmtree
 import numpy as np
 import shutil, sys
+from tempfile import gettempdir
 
 SCRIPTDIR= abspath(dirname(__file__))