Bug fix of v2.0

Remove trailing underscores of outPrefix of ANTs registration from functions register_target() and register_harmonized().

Combined, containerized single-multi shell harmonization

• Combined single and multi shell software
• Provides Singularity container
• Eliminates psutil
• Provides --ncpu 1 debug option
• Revised installation infrastructure supporting python==3.8 and dipy==1.8.0
• Test for multi shell software
• Provides MCRROOT to only spm_bspline
• Fixes meanFAstat plot for unequal number of reference and target subjects

Point of return before combining single and multi shell software

This release contain ordinary changes over v1.7. These are safe changes. This release will serve as the point of return before combining single and multi shell harmonization software.

PRs merged: #37 , #40 , #41 , #42 .

Update GFA calculation and harmonized FA warping to MNI

PR #37
PR #32
PR #29

(This release was sitting in draft for a long time. So publishing it)

Bug fixes from v1.5 and some enhancements

• BUG fixes

  • near-zero bvalue handling
  • smoothing parameter

  Fixed #18, #19, #21

• /tmp-->tempfile.gettempdir()

Memory efficient, rewrite capable, structured output

1. dti_harm() is separated from preprocess()
2. --force is coupled with writing each file
3. statistics are exported to csv file
4. graph is provided to demonstrate goodness of dMRIharmonization

Functional pipeline

TBD:

i. Whole pipeline tests
ii. Unit tests
iii. Public test data

Initial release

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