replace missing values in scenario data with zeroes

romainsacchi · romainsacchi · commit cabe53277ff4 · 2026-01-20T11:53:18.000+01:00
diff --git a/pathways/pathways.py b/pathways/pathways.py
@@ -406,6 +406,9 @@ def _get_scenarios(self, scenario_data: pd.DataFrame) -> xr.DataArray:
             .to_xarray()
         )
 
+        # fill missing values with zeros
+        data = data.fillna(0)
+
         # convert values under "model" column to lower case
         data.coords["model"] = [x.lower() for x in data.coords["model"].values]
 

Original file line number	Diff line number	Diff line change
`@@ -406,6 +406,9 @@ def _get_scenarios(self, scenario_data: pd.DataFrame) -> xr.DataArray:`
`406`	`406`	`.to_xarray()`
`407`	`407`	`)`
`408`	`408`
	`409`	`+ # fill missing values with zeros`
	`410`	`+ data = data.fillna(0)`
	`411`	`+`
`409`	`412`	`# convert values under "model" column to lower case`
`410`	`413`	`data.coords["model"] = [x.lower() for x in data.coords["model"].values]`
`411`	`414`