chore: update serena project configuration

Author: jerome-benoit

.serena/project.yml

@@ -1,79 +1,54 @@
+
+
 # list of languages for which language servers are started; choose from:
-#   al               bash             clojure          cpp              csharp           csharp_omnisharp
-#   dart             elixir           elm              erlang           fortran          go
-#   haskell          java             julia            kotlin           lua              markdown
-#   nix              perl             php              python           python_jedi      r
-#   rego             ruby             ruby_solargraph  rust             scala            swift
-#   terraform        typescript       typescript_vts   zig
+#   al                  ansible             bash                clojure             cpp
+#   cpp_ccls            crystal             csharp              csharp_omnisharp    dart
+#   elixir              elm                 erlang              fortran             fsharp
+#   go                  groovy              haskell             haxe                hlsl
+#   java                json                julia               kotlin              lean4
+#   lua                 luau                markdown            matlab              msl
+#   nix                 ocaml               pascal              perl                php
+#   php_phpactor        powershell          python              python_jedi         python_ty
+#   r                   rego                ruby                ruby_solargraph     rust
+#   scala               solidity            swift               systemverilog       terraform
+#   toml                typescript          typescript_vts      vue                 yaml
+#   zig
+#   (This list may be outdated. For the current list, see values of Language enum here:
+#   https://github.com/oraios/serena/blob/main/src/solidlsp/ls_config.py
+#   For some languages, there are alternative language servers, e.g. csharp_omnisharp, ruby_solargraph.)
 # Note:
 #   - For C, use cpp
 #   - For JavaScript, use typescript
+#   - For Free Pascal/Lazarus, use pascal
 # Special requirements:
-#   - csharp: Requires the presence of a .sln file in the project folder.
+#   Some languages require additional setup/installations.
+#   See here for details: https://oraios.github.io/serena/01-about/020_programming-languages.html#language-servers
 # When using multiple languages, the first language server that supports a given file will be used for that file.
 # The first language is the default language and the respective language server will be used as a fallback.
 # Note that when using the JetBrains backend, language servers are not used and this list is correspondingly ignored.
 languages:
-  - typescript
+- typescript
 
-  # the encoding used by text files in the project
-  # For a list of possible encodings, see https://docs.python.org/3.11/library/codecs.html#standard-encodings
+# the encoding used by text files in the project
+# For a list of possible encodings, see https://docs.python.org/3.11/library/codecs.html#standard-encodings
 encoding: 'utf-8'
 
-# whether to use the project's gitignore file to ignore files
-# Added on 2025-04-07
+# whether to use project's .gitignore files to ignore files
 ignore_all_files_in_gitignore: true
 
-# list of additional paths to ignore
-# same syntax as gitignore, so you can use * and **
-# Was previously called `ignored_dirs`, please update your config if you are using that.
-# Added (renamed) on 2025-04-07
+# list of additional paths to ignore in this project.
+# Same syntax as gitignore, so you can use * and **.
+# Note: global ignored_paths from serena_config.yml are also applied additively.
 ignored_paths: []
 
 # whether the project is in read-only mode
 # If set to true, all editing tools will be disabled and attempts to use them will result in an error
 # Added on 2025-04-18
 read_only: false
 
-# list of tool names to exclude. We recommend not excluding any tools, see the readme for more details.
-# Below is the complete list of tools for convenience.
-# To make sure you have the latest list of tools, and to view their descriptions,
-# execute `uv run scripts/print_tool_overview.py`.
-#
-#  * `activate_project`: Activates a project by name.
-#  * `check_onboarding_performed`: Checks whether project onboarding was already performed.
-#  * `create_text_file`: Creates/overwrites a file in the project directory.
-#  * `delete_lines`: Deletes a range of lines within a file.
-#  * `delete_memory`: Deletes a memory from Serena's project-specific memory store.
-#  * `execute_shell_command`: Executes a shell command.
-#  * `find_referencing_code_snippets`: Finds code snippets in which the symbol at the given location is referenced.
-#  * `find_referencing_symbols`: Finds symbols that reference the symbol at the given location (optionally filtered by type).
-#  * `find_symbol`: Performs a global (or local) search for symbols with/containing a given name/substring (optionally filtered by type).
-#  * `get_current_config`: Prints the current configuration of the agent, including the active and available projects, tools, contexts, and modes.
-#  * `get_symbols_overview`: Gets an overview of the top-level symbols defined in a given file.
-#  * `initial_instructions`: Gets the initial instructions for the current project.
-#     Should only be used in settings where the system prompt cannot be set,
-#     e.g. in clients you have no control over, like Claude Desktop.
-#  * `insert_after_symbol`: Inserts content after the end of the definition of a given symbol.
-#  * `insert_at_line`: Inserts content at a given line in a file.
-#  * `insert_before_symbol`: Inserts content before the beginning of the definition of a given symbol.
-#  * `list_dir`: Lists files and directories in the given directory (optionally with recursion).
-#  * `list_memories`: Lists memories in Serena's project-specific memory store.
-#  * `onboarding`: Performs onboarding (identifying the project structure and essential tasks, e.g. for testing or building).
-#  * `prepare_for_new_conversation`: Provides instructions for preparing for a new conversation (in order to continue with the necessary context).
-#  * `read_file`: Reads a file within the project directory.
-#  * `read_memory`: Reads the memory with the given name from Serena's project-specific memory store.
-#  * `remove_project`: Removes a project from the Serena configuration.
-#  * `replace_lines`: Replaces a range of lines within a file with new content.
-#  * `replace_symbol_body`: Replaces the full definition of a symbol.
-#  * `restart_language_server`: Restarts the language server, may be necessary when edits not through Serena happen.
-#  * `search_for_pattern`: Performs a search for a pattern in the project.
-#  * `summarize_changes`: Provides instructions for summarizing the changes made to the codebase.
-#  * `switch_modes`: Activates modes by providing a list of their names
-#  * `think_about_collected_information`: Thinking tool for pondering the completeness of collected information.
-#  * `think_about_task_adherence`: Thinking tool for determining whether the agent is still on track with the current task.
-#  * `think_about_whether_you_are_done`: Thinking tool for determining whether the task is truly completed.
-#  * `write_memory`: Writes a named memory (for future reference) to Serena's project-specific memory store.
+# list of tool names to exclude.
+# This extends the existing exclusions (e.g. from the global configuration)
+# Find the list of tools here: https://oraios.github.io/serena/01-about/035_tools.html
 excluded_tools: []
 
 # initial prompt for the project. It will always be given to the LLM upon activating the project
@@ -82,7 +57,9 @@ initial_prompt: ''
 # the name by which the project can be referenced within Serena
 project_name: 'poolifier-web-worker'
 
-# list of tools to include that would otherwise be disabled (particularly optional tools that are disabled by default)
+# list of tools to include that would otherwise be disabled (particularly optional tools that are disabled by default).
+# This extends the existing inclusions (e.g. from the global configuration).
+# Find the list of tools here: https://oraios.github.io/serena/01-about/035_tools.html
 included_optional_tools: []
 
 # list of mode names to that are always to be included in the set of active modes
@@ -93,19 +70,25 @@ included_optional_tools: []
 # Set this to a list of mode names to always include the respective modes for this project.
 base_modes:
 
-# list of mode names that are to be activated by default.
-# The full set of modes to be activated is base_modes + default_modes.
-# If the setting is undefined, the default_modes from the global configuration (serena_config.yml) apply.
+# list of mode names that are to be activated by default, overriding the setting in the global configuration.
+# The full set of modes to be activated is base_modes (from global config) + default_modes + added_modes.
+# If the setting is undefined/empty, the default_modes from the global configuration (serena_config.yml) apply.
 # Otherwise, this overrides the setting from the global configuration (serena_config.yml).
+# Therefore, you can set this to [] if you do not want the default modes defined in the global config to apply
+# for this project.
 # This setting can, in turn, be overridden by CLI parameters (--mode).
+# See https://oraios.github.io/serena/02-usage/050_configuration.html#modes
 default_modes:
 
 # fixed set of tools to use as the base tool set (if non-empty), replacing Serena's default set of tools.
 # This cannot be combined with non-empty excluded_tools or included_optional_tools.
+# Find the list of tools here: https://oraios.github.io/serena/01-about/035_tools.html
 fixed_tools: []
 
-# override of the corresponding setting in serena_config.yml, see the documentation there.
-# If null or missing, the value from the global config is used.
+# time budget (seconds) per tool call for the retrieval of additional symbol information
+# such as docstrings or parameter information.
+# This overrides the corresponding setting in the global configuration; see the documentation there.
+# If null or missing, use the setting from the global configuration.
 symbol_info_budget:
 
 # The language backend to use for this project.
@@ -137,3 +120,8 @@ ignored_memory_patterns: []
 # Have a look at the docstring of the constructors of the LS implementations within solidlsp (e.g., for C# or PHP) to see which options are available.
 # No documentation on options means no options are available.
 ls_specific_settings: {}
+
+# list of mode names to be activated additionally for this project, e.g. ["query-projects"]
+# The full set of modes to be activated is base_modes (from global config) + default_modes + added_modes.
+# See https://oraios.github.io/serena/02-usage/050_configuration.html#modes
+added_modes: