BLD: Add lower boundary for required dependencies; strip dependencies for conda YAML file

Author: ryder-davidson

environment.yml

@@ -5,7 +5,7 @@ dependencies:
   - python=3.13
 
   # -------- Python Runtime --------
-  - numpy=2.3.*
+  - numpy
   - pyvista
   - scipy
   - astropy

pyproject.toml

@@ -53,11 +53,11 @@ classifiers = [
 ]
 requires-python = ">=3.10"
 dependencies = [
-  "numpy",
-  "pyvista",
+  "numpy>=2.1.0",
+  "pyvista>=0.47.0",
   "psi-io>=2.0.6",
-  "sunpy",
-  "astropy",
+  "sunpy>=6.0.3",
+  "astropy>=6.1.3",
 ]
 
 # Project Dependencies
@@ -110,7 +110,7 @@ dev = [
   "nox>=2025.11.12",
 ]
 all = [
-  "psi-io[hdf4,interp,tracing,data,build,test,types,lint,docs,dev]",
+  "psi-pyvisual[hdf4,interp,tracing,data,build,test,types,lint,docs,dev]",
 ]
 
 # Tools & Extensions
@@ -134,5 +134,165 @@ exclude = [
 
 [tool.setuptools.package-data]
 "pyvisual" = [
-  "assets/*.json",
+  "_assets/*.json",
+]
+
+# Testing (pytest) configuration
+# ------------------------------
+[tool.pytest.ini_options]
+minversion = "8.0"
+testpaths = ["tests"]
+#markers = [
+#  "h4: tests that exercise the HDF4 backend",
+#  "h5: tests that exercise the HDF5 backend",
+#  "benchmark: performance benchmark tests",
+#  "read_hdf_by_index: tests for read_hdf_by_index function",
+#  "read_hdf_by_value: tests for read_hdf_by_value function",
+#  "read_hdf_by_ivalue: tests for read_hdf_by_ivalue function",
+#]
+addopts = [
+  "-ra",
+  "--cov=pyvisual",
+  "--cov-report=term-missing",
+  "--maxfail=1",
+  "--import-mode=importlib",
+]
+
+# Coverage (pytest-cov) configuration
+# -----------------------------------
+[tool.coverage.run]
+branch = true
+source = ["pyvisual"]
+parallel = true
+relative_files = true
+omit = [
+  "tests/*",
+  "docs/_build/*",
+]
+
+[tool.coverage.report]
+show_missing = true
+skip_covered = true
+exclude_lines = [
+  "pragma: no cover",
+  "if TYPE_CHECKING:",
+  "raise NotImplementedError",
+  "def __repr__",
+]
+
+# Typing (mypy) configuration
+# ---------------------------
+[tool.mypy]
+strict = true
+ignore_missing_imports = true
+files = ["pyvisual"]
+
+[[tool.mypy.overrides]]
+module = "pyvisual.*"
+ignore_missing_imports = false
+
+# Linting (ruff) configuration
+# ----------------------------
+[tool.ruff]
+fix = false
+unsafe-fixes = false
+line-length = 100
+src = ["pyvisual"]
+extend-exclude = [
+  "docs",
+  ".nox",
+  ".mypy_cache",
+  ".ruff_cache",
+  ".pytest_cache",
+  "src",
+  "tests"
+]
+
+[tool.ruff.lint]
+explicit-preview-rules = true
+preview = true
+extend-select = [
+  "A",     # flake8-builtins
+  "AIR",   # Airflow
+  "ANN",   # flake8-annotations
+  "ARG",   # flake8-unused-arguments
+  "ASYNC", # flake8-async
+  "B",     # flake8-bugbear
+  "BLE",   # flake8-blind-except
+  "C4",    # flake8-comprehensions
+  "C90",   # mccabe
+  "COM",   # flake8-commas
+  # "CPY",   # flake8-copyright  # TODO: enable when out of preview
+  "D",     # pydocstyle
+  "DJ",    # flake8-django
+  # "DOC",   # pydocstyle  # TODO: enable when out of preview
+  "DTZ",   # flake8-datetimez
+  "E",     # pycodestyle
+  "EM",    # flake8-errmsg
+  "ERA",   # Eradicate
+  "EXE",   # flake8-executable
+  "F",     # Pyflakes
+  "FA",    # flake8-future-annotations
+  "FBT",   # flake8-boolean-trap
+  "FIX",   # flake8-fixme
+  "FLY",   # flynt
+  "FURB",  # refurb
+  "G",     # flake8-logging-format
+  "I",     # isort
+  "ICN",   # flake8-import-conventions
+  "INP",   # flake8-no-pep420
+  "INT",   # flake8-gettext
+  "ISC",   # flake8-implicit-str-concat
+  "LOG",   # flake8-logging
+  "N",     # pep8-naming
+  "NPY",   # NumPy-specific rules
+  "PERF",  # Perflint
+  "PGH",   # pygrep-hooks
+  "PIE",   # flake8-pie
+  "PL",    # Pylint
+  "PT",    # flake8-pytest-style
+  "PTH",   # flake8-use-pathlib
+  "PYI",   # flake8-pyi
+  "Q",     # flake8-quotes
+  "RET",   # flake8-return
+  "RSE",   # flake8-raise
+  "RUF",   # Ruff-specific rules
+  "S",     # flake8-bandit
+  "SIM",   # flake8-simplify
+  "SLOT",  # flake8-slots
+  "T10",   # flake8-debugger
+  "T20",   # flake8-print
+  "TD",    # flake8-todos
+  "TID",   # flake8-tidy-imports
+  "TRY",   # tryceratops
+  "UP",    # pyupgrade
+  "W",     # pycodestyle
+  "YTT",   # flake8-2020
+]
+ignore = [
+  "B905",    #`zip()` without an explicit `strict=` parameter
+  "C408",    # Unnecessary `dict()` call (rewrite as a literal)
+  "NPY002", # Replace legacy `np.random.rand` call with `np.random.Generator`
+]
+
+
+[tool.ruff.lint.pydocstyle]
+convention = "numpy"
+
+[tool.ruff.lint.isort]
+known-first-party = ["psi_io"]
+combine-as-imports = true
+force-single-line = true
+force-sort-within-sections = true
+required-imports = [
+  "from __future__ import annotations",
+]
+
+# Documentation (sphinx) configuration
+# ------------------------------------
+[tool.sphinx_build]
+addopts = [
+  "-b", "html",
+  "-a",
+  "-E"
 ]